Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq25 111 1e-19 seq1 102 5e-17 >seq25 Length=839721 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||| || || ||||||||||| || || || || || ||||| || || Sbjct 326575 AGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTACGA 326634 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | ||||| |||||||| || | |||||| Sbjct 326635 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCC 326694 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | || ||| | || ||||| ||| || || | ||| Sbjct 326695 TTATC-CTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACCTCGAGGGT 326753 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| ||||| || ||||| || || |||||||||||| Sbjct 326754 GATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 Score = 91.5 bits (100), Expect = 9e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||||| ||||| |||||||| ||||| || || || || | || || | ||| Sbjct 326874 TGGAGAGTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGC 326933 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || ||||| || | |||||||||||| || || | ||||||||||| Sbjct 326934 TTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTC 326983 >seq1 Length=3640883 Score = 102 bits (112), Expect = 5e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 34497 CACCAAA-TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| || || || ||||| || |||||||||||||| || || || ||| |||| | Sbjct 1685313 CACCAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCT 1685254 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | | || || || || || || | |||||| || ||||| || | || |||||||| Sbjct 1685253 CCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT 1685194 Query 34616 TGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||| |||| || ||| | |||||| || ||| || |||| ||| || || Sbjct 1685193 GGATC-TTTGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTC 1685135 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || | ||| |||||||| |||||||| Sbjct 1685134 TTCCCCGTCAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| ||||| |||||| ||||| |||||||| ||||| || || Sbjct 1685092 AGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCAGAAAGAGTACGA 1685033 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| ||||| || || | |||||||| || || || | |||||| Sbjct 1685032 CCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGAGGGATGCCCTCC 1684973 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||| || || | || Sbjct 1684972 TTGTCCTGGATC-TTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCGAGAGT 1684914 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| || || || || |||||||| || ||||| Sbjct 1684913 GATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 1684875 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||| ||||| || | || || | ||||| | || || || || || Sbjct 1684504 CTCCTTCTGAATGTTGTAATCCGACAACGTCCGACCATCTTCCAACTGCTTCCCAGCGAA 1684445 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||| || || || || || | |||||||| ||| |||||| | ||| ||| Sbjct 1684444 GATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTATCTTGGATCTTG-GCTTTGACGT 1684386 Query 34635 TAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||||||||| | |||||| |||| || ||||| || || || || || || | Sbjct 1684385 TATCAATTGTGTCAGAGGACTCCACCTCCAGCGTGATCGTCTTTCCCGTCAAAGTCTTGA 1684326 Query 34694 CAAAAATCTGCAT 34706 | ||||||||||| Sbjct 1684325 CGAAAATCTGCAT 1684313 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 34497 CACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| ||| ||||| |||||| || ||||| ||||| |||||||| || | || | Sbjct 1684804 CACCAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCT 1684745 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | ||||| || || || || || | ||||| ||||| || || | ||||||||||| Sbjct 1684744 CGAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCT 1684685 Query 34616 TGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||| |||| || ||| | |||||||| || || || | || || || Sbjct 1684684 GGATC-TTTGCCTTCACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTC 1684626 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||||||||| ||||| Sbjct 1684625 TTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 1684594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729112857591