Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq25 105 6e-18 seq1 105 6e-18 >seq25 Length=839721 Score = 105 bits (116), Expect = 6e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 39076 ACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| | ||||||||| || || ||||| || || | ||| || || | || || Sbjct 327428 ACCAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTC 327487 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| |||||||| || || || ||||||||||||| || | || || || ||| Sbjct 327488 GAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTG 327547 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| |||| | | | || ||| |||||||| || | |||||| | || Sbjct 327548 AATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTT 327607 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| ||| || |||||||| ||||| Sbjct 327608 CCCCGTCAACGTCTTGACAAAGATCTGCAT 327637 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| || ||||||||||| || || ||||| || |||| ||| || || || Sbjct 326578 CGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAAAGCGTACGACCG 326637 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| ||||| ||||| || || ||||||||||| | || | || ||| || Sbjct 326638 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTA 326697 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| || ||| |||| ||| | | | || || |||||| || || | ||||| Sbjct 326698 TCCTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGAT 326756 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| ||| ||||| || || ||||| Sbjct 326757 CGTCTTACCAGTCAACGTCTTAACGAAAATCTGCAT 326792 >seq1 Length=3640883 Score = 105 bits (116), Expect = 6e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133 |||||| || || || |||||||| || || |||||||||| || || || |||| | Sbjct 1685313 CACCAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCT 1685254 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 | | ||| || || || || || ||||||||||| || | || | || || |||||| Sbjct 1685253 CCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT 1685194 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | ||| | | | ||||| |||||| || |||| |||||| | Sbjct 1685193 GGATCTT-TGCCTTCACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTC 1685135 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||||||| || |||||||| ||||| Sbjct 1685134 TTCCCCGTCAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||||||||| | ||| || || |||| || ||||||||||| || || Sbjct 1685066 CTCCTTCTGAATATTATAATCAGAAAGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAA 1685007 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||| || || | || | || ||| |||||| ||| ||| |||| ||| Sbjct 1685006 GATCAGGCGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 1684948 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| ||||| || || | ||||| |||| || |||| || || | Sbjct 1684947 TGTCGATGGTGTCGGAAGACTCGACCTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCA 1684888 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 1684887 CAAAGATTTGCAT 1684875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544935143951