Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25 98.7 7e-16 seq1 89.7 3e-13 >seq25 Length=839721 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| || | Sbjct 327077 AATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACGATTACTCTTGAGGTTGAGTCGTC 327018 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | | || || ||| ||||| || || | || || || || Sbjct 327017 GGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 326958 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| ||||| ||| |||| || | ||||| | |||||||| Sbjct 326957 ACAGCGTCTCATCTTTGCTGGCAAGCAATTGGAGGATGGTCGCACGCTCTCTGATTACAA 326898 Query 23790 CATACAAAAAGA 23801 ||| || || || Sbjct 326897 CATTCAGAAGGA 326886 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| || | || || || |||||||| ||||| ||||| || || Sbjct 326792 ATGCAGATTTTCGTTAAGACGTTGACTGGTAAGACGATCACCCTCGAGGTTGAGTCGTCG 326733 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || || || | || || || || Sbjct 326732 GACACCATCGACAACGTCAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCGGACCAG 326673 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| |||| || || | ||| ||||| Sbjct 326672 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTTTCCGACTACAAT 326613 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 326612 ATCCAGAAGGAG 326601 >seq1 Length=3640883 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | |||||||| |||||||| || || || || ||| | Sbjct 1684313 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACGATCACGCTGGAGGTGGAGTCCTCT 1684372 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || || || || || | || || ||||| Sbjct 1684373 GACACAATTGATAACGTCAAAGCCAAGATCCAAGATAAGGAGGGCATTCCCCCTGATCAG 1684432 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || ||||||| | || || || ||||||||| Sbjct 1684433 CAACGTCTCATCTTCGCTGGGAAGCAGTTGGAAGATGGTCGGACGTTGTCGGATTACAAC 1684492 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||| ||| | ||| Sbjct 1684493 ATTCAGAAGGAGTCGACACTTCAT 1684516 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || ||||||||||||||||| || || || | Sbjct 1684875 ATGCAAATCTTTGTGAAGACCTTGACAGGGAAAACGATCACTCTCGAGGTCGAGTCTTCC 1684934 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || |||||| Sbjct 1684935 GACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1684994 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||||||||| || || |||| || ||| | ||||| || Sbjct 1684995 CAGCGCCTGATCTTCGCCGGCAAACAGCTCGAGGACGGTCGTACTCTTTCTGATTATAAT 1685054 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || | ||| | ||| | | |||| || ||| Sbjct 1685055 ATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGTCTGCGTGGTGGA 1685102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009076824516