Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 138 2e-27 seq11 104 3e-17 >seq3 Length=2745113 Score = 138 bits (152), Expect = 2e-27 Identities = 345/519 (66%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| |||||||| ||||||||||| |||||||| ||||| | ||| Sbjct 2542878 TCGTTCGAGAACGTGAGGCCAGGCATGAGTCCACGCTTCTTGAGCCAGAATATCGATGCG 2542819 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||| || || || || || || ||||| || ||||| || ||||| | ||| || || Sbjct 2542818 AAAGAGCCGGAGAAAAAGATACCCTCTACGGCGGCGAAAGCCACAAGACGCTCAGCGAAA 2542759 Query 46792 CTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | || | | ||||| | |||||| || ||||| ||||| | ||||| Sbjct 2542758 GAAGAGCTCTTGTCAGATATCCAGCGCAAAGCCCAGTCTGCCTTCTTCTTGATGCAAGGG 2542699 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttt---tttCATCACTATCTTTAACATATGTA 46905 || || || || || | || || || || | || || || | ||| || Sbjct 2542698 ATAGTCTCGATGGCGTCGAACAG---GTGTTCGCGCTGCTCGGGGTCCTTGATATAGGTG 2542642 Query 46906 TCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAA 46965 || || || || || | || || || ||||| || || ||||| || ||||| Sbjct 2542641 TCGATCAACAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAG 2542582 Query 46966 AAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATT 47024 || || | ||| |||| ||| ||||| | | || || || ||||| |||||||| Sbjct 2542581 AAGCAGCGTGCCTCAGCGGCCTGAACCTCGTTGGAGAAACGCTC-GACAAGGTTCTCATT 2542523 Query 47025 CACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084 || || || || || |||||||| || | ||||| || ||| | || || Sbjct 2542522 GACGATACCGTCCGACGCGGCAAAAAACGCGAGGACATGGGAGATGAAAAAGCGCTCGTC 2542463 Query 47085 GGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 47141 || | | | | || |||||||| | ||||| || || | ||| | || || || || Sbjct 2542462 GGCATTGAGACGATTGTTCCAGTCGTGCATATCCTTGGAGAGATCCATCTCCTCTGCAGT 2542403 Query 47142 CCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||| || || || || || || ||||| ||||| || Sbjct 2542402 CCAGAAGGAAGCTTCCGCCTTCTTGTACATGTTCCAAAT 2542364 >seq11 Length=1765784 Score = 104 bits (114), Expect = 3e-17 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 76900 GATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTT 76959 ||| | ||||||| ||||| |||||||||||||| ||||| || ||| ||||| Sbjct 1056536 GATCATAGCACAGTTCTTCAAGGTGTCATAGATGCCTTCTATGGAGTCGTCCTTCATGCA 1056477 Query 76960 AAG-AAGAA--AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGG 77016 || ||||| | |||| ||||||| | | || || ||||| || | || || Sbjct 1056476 AACCAAGAAGCAGGAGCT---CATTTGAGGGTTGGGGGTACCCGCATTGAAGAGAGTCGG 1056420 Query 77017 AGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTAT 77076 |||||||||||||| | || | || | || || || || || || | || || Sbjct 1056419 CGATGCATGAGTGAAGAAGCTT-CGGACATAAGGTTATAGGTCTCGATGGCGCGCTCAAT 1056361 Query 77077 ATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGT 77136 ||| | ||||| || || || ||||||||||||||||||||||| ||||| | || Sbjct 1056360 ATCAGAGCCGTGAATACCCACTGCCACACGCATCAACATATGCTGAGGGCGTTCGGCTGT 1056301 Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 | ||| || |||| || |||||| ||| | || ||||| ||||| Sbjct 1056300 ACGACCATTGATCTTCAGCAGGTATGAGCGTTCAAGTGTCTTAAATCCAAA 1056250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933268216640