Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq25 188 1e-42 seq1 178 3e-39 seq3 93.3 9e-14 >seq25 Length=839721 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || | ||||| || | |||||| || || ||||| |||||||| | | Sbjct 326566 CCACCGCGGAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAA 326625 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || ||||||||||||| || || ||||| ||| Sbjct 326626 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 326685 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | ||||| |||||||| | || || Sbjct 326686 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAACC 326745 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||||||||||||| ||||| ||||||||||| |||||||| Sbjct 326746 TCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCAT 326792 Score = 181 bits (200), Expect = 2e-40 Identities = 159/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 |||||||| || || |||||||| |||| |||||||| |||||||| | ||| || || Sbjct 326880 GTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAATTGCTTGCCA 326939 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||| | ||| ||||||||| || || ||||||||||| || ||||| || || Sbjct 326940 GCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 326999 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 ||| ||||||| |||||||| | || || || ||||| |||||||| ||||||| ||| Sbjct 327000 ACGTTATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGCCCGTCAGGGTC 327059 Query 283083 TTAACGAATATCTGCATT 283100 || ||||| ||||||||| Sbjct 327060 TTGACGAAGATCTGCATT 327077 Score = 156 bits (172), Expect = 9e-33 Identities = 162/211 (77%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 282890 TACCA-GATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 ||||| |||| |||||||| || || ||||| |||||||||| ||| ||||||||||||| Sbjct 327427 TACCAAGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCT 327486 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | || || || || || ||||| | || || ||||| ||||| || ||||| || | Sbjct 327487 CGAGCTGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCT 327546 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | ||||| || || || | ||||| ||||| || | || || || || ||||| |||| Sbjct 327547 GAATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCT 327606 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| ||||| || || |||||||| Sbjct 327607 TCCCCGTCAACGTCTTGACAAAGATCTGCAT 327637 Score = 143 bits (158), Expect = 6e-29 Identities = 159/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 282890 TACC-AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCT 282948 |||| ||||| | || || || || || ||||||||||||| ||| || || || |||| Sbjct 327149 TACCGAGATGGAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCT 327208 Query 282949 CTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 | | || || || || || |||| || || || ||| || |||||||||||||| | Sbjct 327209 CCAACTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCT 327268 Query 283009 GGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCT 283068 | ||||| || || || | ||||| ||||| || | ||||| ||||||||||| |||| Sbjct 327269 GAATCTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCT 327328 Query 283069 TACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||| || || |||||||| Sbjct 327329 TCCCGGTCAACGTCTTGACAAAGATCTGCAT 327359 >seq1 Length=3640883 Score = 178 bits (196), Expect = 3e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| |||| ||| || || |||||||| ||||| || || || || Sbjct 1684784 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCTCGAGTTGCTTTCCAGCGAAA 1684725 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || |||||| ||||||||||||||||| ||||||||||| || ||| | Sbjct 1684724 ATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTG 1684665 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| |||||| || |||||||| ||||| || ||||||||||| || Sbjct 1684664 TCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTCACA 1684605 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 1684604 AAAATTTGCAT 1684594 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| || ||||| | || || || || || || || |||| | Sbjct 1685101 CCACCACGCAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCAGAA 1685042 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || ||||| ||||| ||||||| || ||||| ||| || Sbjct 1685041 AGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGAGGG 1684982 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 1684981 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACC 1684922 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || || ||||| ||||| || || || ||||| Sbjct 1684921 TCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 1684875 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| ||||| || ||||| | || || || || ||||||||||| | Sbjct 1684312 ACCGCCACGCAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 1684253 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || ||||| |||||||| | || || ||||| || Sbjct 1684252 GAGGGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGG 1684193 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || |||||||| || ||| | ||||| ||||| || | ||||| Sbjct 1684192 GATACCCTCCTTATCCTGAATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGAC 1684133 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || |||||||| ||||| | ||||| || || |||||||| Sbjct 1684132 TTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| || | | ||| || ||||| || | || ||||| || ||| Sbjct 1684503 TCCTTCTGAATGTTGTAATCCGACAACGTCCGACCATCTTCCAACTGCTTCCCAGCGAAG 1684444 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || ||| ||||| |||||||| ||||||||||| ||||| ||| || Sbjct 1684443 ATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTATCTTGGATCTTGGCTTTGACGTTA 1684384 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || || || || ||||||||||| |||||||||||||| ||| Sbjct 1684383 TCAATTGTGTCAGAGGACTCCACCTCCAGCGTGATCGTCTTTCCCGTCAAAGTCTTGACG 1684324 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 1684323 AAAATCTGCAT 1684313 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 || || ||||| || ||||| || || | ||||| || || ||||| | || || || Sbjct 1685299 GTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCTCCAACTGCTTTCCA 1685240 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 || ||||| | ||| || || || ||||| || |||||||| ||||||||||| || Sbjct 1685239 GCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTC 1685180 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 ||| | || || || ||||| | ||||| || | ||||| ||||| ||||||| ||| Sbjct 1685179 ACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTCTTCCCCGTCAGCGTC 1685120 Query 283083 TTAACGAATATCTGCATT 283100 || || || ||||||||| Sbjct 1685119 TTCACAAAGATCTGCATT 1685102 Score = 105 bits (116), Expect = 1e-17 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| ||||||| || ||||| || || ||| |||||||||||||||||| ||||| Sbjct 1683908 TACCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCGATAGTGTCCGAAGACTCGACC 1683849 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| || || | ||||| ||||| |||||||| || Sbjct 1683848 TCAAGAGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCATGTT 1683799 >seq3 Length=2745113 Score = 93.3 bits (102), Expect = 9e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || |||||| | || || ||||| ||||| || || || | Sbjct 2540337 CTCATCGGCATGAACGCCTCGCTCATGTGTCAGTACATCGAGTTCGTCGCCGACCGCCTC 2540278 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || |||| ||| || ||| || ||||| ||||||||||| || ||||| Sbjct 2540277 CTGGTCTCGCTCGGGAACCCGAAGCACTACAACTCGTCGAACCCCTTCGACTTCATGGAC 2540218 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 ||||| || || || || || || ||||||||||| |||||||| Sbjct 2540217 CTCATATCGCTGCAAGGCAAGACCAACTTCTTCGAGAAGCGTGT 2540174 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 230212 TTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAG 230271 |||| ||| | || || |||||||| || |||||| | || || ||||| ||||| | Sbjct 2543074 TTCCATGCGGACTCATTGGCATGAACGCGACGCTCATGTGCCAGTACATCGAGTTCGTTG 2543133 Query 230272 CTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCG 230331 | |||||| | | || || || || || || | || ||| | | |||||| |||| Sbjct 2543134 CCGATCGTCTGGTGGTTGCCCTCGGTAACCCTAAGATCTACAACGCGACGAACCCTTTCG 2543193 Query 230332 CTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCG 230391 |||||||| | || || || || || || || ||||||||||| ||||| ||| | Sbjct 2543194 ACTTTATGGATATGATCTCGCTGCAAGGCAAGACGAACTTCTTCGAGAAGCGCGTCTCAG 2543253 Query 230392 ATTA-TCAAAGGCC 230404 | || || |||||| Sbjct 2543254 ACTACTCGAAGGCC 2543267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737496759058