Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grifola_20frondosa_20[genbank_20GCA_5F001683735.1_202016-07-12] 127 sequences; 39,289,314 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq25 185 8e-42 seq1 152 5e-32 seq6 96.9 3e-15 >seq25 Length=839721 Score = 185 bits (204), Expect = 8e-42 Identities = 180/229 (79%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || ||||| || ||||||||||||||||| || || |||||||| Sbjct 326566 CCACCGCGGAGACGCAAGACCAGGTGAAGCGTGCTCTCCTTCTGGATATTGTAGTCGGAA 326625 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||||||||| || ||||||||||| ||||||| ||| Sbjct 326626 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 326685 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || || | ||| | | | ||||| |||||| || Sbjct 326686 ATGCCCTCCTTATCC-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCCGACGACTCAAC 326744 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| ||||| |||| |||||| ||||||||||||||| Sbjct 326745 CTCGAGGGTGATCGTCTTACCAGTCAACGTCTTAACGAAAATCTGCATG 326793 Score = 143 bits (158), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||||| ||||||||||||||| || || ||||| || || ||||| | || |||||| Sbjct 327432 AGATGCAACGTGCTCTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCCTCGAGC 327491 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| ||||| || |||||||| ||||| | |||| || ||||| ||| ||| | Sbjct 327492 TGCTTGCCCGCGAAGATTAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC-TGAAT 327550 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | || | | | |||||| ||||||||||| | || || || || || Sbjct 327551 CTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATAGTCTTCCC 327610 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| |||||| || || ||||||||| Sbjct 327611 CGTCAACGTCTTGACAAAGATCTGCATG 327638 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || || ||||| |||||||||||||| || || ||||| ||||| | || || | Sbjct 326871 AGGTGGAGAGTGCTTTCCTTCTGAATGTTGTAATCAGAGAGCGTGCGACCATCCTCCAAT 326930 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||| || || || || ||||||||||| | || | || |||||||||| ||| | Sbjct 326931 TGCTTGCCAGCAAAGATGAGACGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAAT 326989 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | ||| | | ||||| |||||| ||||| | || ||||| || || Sbjct 326990 CTTCGCCTTCACGTTATCGATGGTGTCCGACGACTCAACCTCAAGAGTAATCGTCTTGCC 327049 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| ||||| |||||||| Sbjct 327050 CGTCAGGGTCTTGACGAAGATCTGCAT 327076 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || || ||||||||||||||||| ||||| || || || || |||| || | | Sbjct 327154 AGATGGAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCTCCAAC 327213 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || ||||| ||||||||||| || || | ||| | | |||||||||| ||| | Sbjct 327214 TGCTTTCCAGCGAAAATCAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCC-TGAAT 327272 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || || | || | | | |||||| ||||| ||||| | || || || || || Sbjct 327273 CTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTCCC 327332 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| |||||| || || |||||||| Sbjct 327333 GGTCAACGTCTTGACAAAGATCTGCAT 327359 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || |||||||||||||| || || ||||| ||||| ||||| |||| ||||| Sbjct 327718 AGATGGAGTGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGT 327777 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||| || ||||| ||||||||||| ||||| Sbjct 327778 TGCTTACCAGCGAAGATCAGGCGCTGCTGGTC 327809 >seq1 Length=3640883 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||||||||| ||||||||| Sbjct 1684311 CCGCCACGCAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 1684252 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| || || || || |||||||| ||||| | || Sbjct 1684251 AGGGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCGGGAGGG 1684192 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | ||||| | ||| | | | |||||| ||||| || Sbjct 1684191 ATACCCTCCTTATCC-TGAATCTTTGCCTTCACGTTGTCGATTGTGTCGGATGACTCGAC 1684133 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| ||||| || ||||| || ||||| || || |||||||| Sbjct 1684132 TTCAAGCGTAATCGTCTTCCCCGTAAGGGTCTTGACAAAGATCTGCAT 1684085 Score = 141 bits (156), Expect = 9e-29 Identities = 161/212 (76%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || || ||||| |||||||||||||| |||||||| || ||| |||| | Sbjct 1685313 CACCAAGGTGAAGGGTACTCTCTTTCTGAATGTTATAATCGGAGAGCGTACGCCCGTCCT 1685254 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | | |||||| || ||||| || || ||||| || |||| |||| || ||||||||| Sbjct 1685253 CCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT 1685194 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| ||| |||| ||| | | | || || |||||| ||||||| || || || Sbjct 1685193 GGATCTTTGCCTTC-ACGTTGTCAATTGTATCCGACGACTCGACCTCCAAGGTGATAGTC 1685135 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||||||||| || || |||||||| Sbjct 1685134 TTCCCCGTCAGCGTCTTCACAAAGATCTGCAT 1685103 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||||||| ||||| || || Sbjct 1685101 CCACCACGCAGACGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATATTATAATCAGAA 1685042 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||| ||||||||||| |||||||||||||| || | || Sbjct 1685041 AGAGTACGACCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGGCGCTGTTGATCAGGAGGG 1684982 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | |||||| ||||| || Sbjct 1684981 ATGCCCTCCTTGTCC-TGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGAC 1684923 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || |||||||| || |||| ||||| || || || ||||| Sbjct 1684922 CTCGAGAGTGATCGTTTTCCCTGTCAAGGTCTTCACAAAGATTTGCAT 1684875 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || || ||||||||||||||| || || || | || || | || || | | Sbjct 1684518 AGATGAAGTGTCGACTCCTTCTGAATGTTGTAATCCGACAACGTCCGACCATCTTCCAAC 1684459 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || ||||| || || || || || || | ||||| || |||||| || ||| Sbjct 1684458 TGCTTCCCAGCGAAGATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTATCTTGGATC 1684399 Query 41777 TTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || |||| ||| || ||||| ||||||||||||| ||| ||||| || || Sbjct 1684398 TTG-GCTTTGACGTTATCAATTGTGTCAGAGGACTCCACCTCCAGCGTGATCGTCTTTCC 1684340 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| ||||| |||||||||||||| Sbjct 1684339 CGTCAAAGTCTTGACGAAAATCTGCAT 1684313 Score = 105 bits (116), Expect = 6e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| |||| || || ||||||||| ||||| || || || || || || | || | Sbjct 1684804 CACCAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGAAAGTGTACGACCATCCT 1684745 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 |||| ||||| || ||||| ||||||||||| ||||| | |||| | |||||||||| Sbjct 1684744 CGAGTTGCTTTCCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCT 1684685 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| ||| |||| ||| | | | ||||| || || ||||| | || || || Sbjct 1684684 GGATCTTTGCCTTC-ACGTTGTCGATTGTGTCAGAAGATTCGACCTCAAGAGTGATAGTC 1684626 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| ||||| || ||||| ||||| Sbjct 1684625 TTGCCAGTCAAAGTCTTCACAAAAATTTGCAT 1684594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| |||||||| Sbjct 1684083 CCACCACGCAGACGGAGGACCAAGTGGAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAC 1684024 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||||||||| ||||| |||| |||||||||||| | ||| Sbjct 1684023 AACGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGTTGGTCAGGAGGA 1683964 Query 41756 ACGCT 41760 | ||| Sbjct 1683963 ATGCT 1683959 >seq6 Length=2010026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||| || ||| ||||||||| ||||| || ||| Sbjct 1330033 CCACCACGGAGACGAAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGCTC 1330092 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | ||||| | || |||||||||||||| ||||| || |||||||||||||| Sbjct 1330093 AAAGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGTTGGTC 1330145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303266092400