Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 122 9e-23 >seq3 Length=3048375 Score = 122 bits (134), Expect = 9e-23 Identities = 358/542 (66%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 |||||||| | || || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1877242 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1877183 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||| || | |||||| || || || ||||| || || || || | || || Sbjct 1877182 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1877123 Query 16343 GCGATTAA--TCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399 || | || |||| || |||| | | | || | || ||||| | | |||| Sbjct 1877122 GCCACCAACCTCGTG--GCAAACGTCG-ACCGTTGGTCAGAGATCCACCTGAGGGCCCAC 1877066 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459 |||| || || || | || || || || || | || || | | | | Sbjct 1877065 TCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGCCACGCTGC 1877006 Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519 ||| || || || ||||| || || | | ||| |||| ||||| ||||| || Sbjct 1877005 TGAGAGTCAGGGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCC 1876946 Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAA 16578 || || ||||||||||| || || || | || || ||||||||| | || |||| Sbjct 1876945 ATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAA 1876887 Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATG 16636 || ||| |||| ||||| || || |||||||| || ||||||||||||| | || Sbjct 1876886 CCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATA 1876827 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA---TGCCAATCTTTTAAATCTTTG 16693 || | ||||||| ||||| | | || || | ||| || | ||||||| Sbjct 1876826 TGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTG 1876769 Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAA 16753 || ||||| | ||||| | ||||||||| |||| || || || ||||| | |||| Sbjct 1876768 GACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAA 1876709 Query 16754 AT 16755 || Sbjct 1876708 AT 1876707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414310502480