Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 9e-23
>seq3
Length=3048375
Score = 122 bits (134), Expect = 9e-23
Identities = 358/542 (66%), Gaps = 15/542 (3%)
Strand=Plus/Minus
Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282
|||||||| | || || |||||||| ||||| ||||| || ||||| |||||||||
Sbjct 1877242 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1877183
Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342
|| | |||||| || | |||||| || || || ||||| || || || || | || ||
Sbjct 1877182 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1877123
Query 16343 GCGATTAA--TCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399
|| | || |||| || |||| | | | || | || ||||| | | ||||
Sbjct 1877122 GCCACCAACCTCGTG--GCAAACGTCG-ACCGTTGGTCAGAGATCCACCTGAGGGCCCAC 1877066
Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459
|||| || || || | || || || || || | || || | | | |
Sbjct 1877065 TCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGCCACGCTGC 1877006
Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519
||| || || || ||||| || || | | ||| |||| ||||| ||||| ||
Sbjct 1877005 TGAGAGTCAGGGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCC 1876946
Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAA 16578
|| || ||||||||||| || || || | || || ||||||||| | || ||||
Sbjct 1876945 ATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAA 1876887
Query 16579 TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATG 16636
|| ||| |||| ||||| || || |||||||| || ||||||||||||| | ||
Sbjct 1876886 CCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATA 1876827
Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA---TGCCAATCTTTTAAATCTTTG 16693
|| | ||||||| ||||| | | || || | ||| || | |||||||
Sbjct 1876826 TGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTG 1876769
Query 16694 GATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAA 16753
|| ||||| | ||||| | ||||||||| |||| || || || ||||| | ||||
Sbjct 1876768 GACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAA 1876709
Query 16754 AT 16755
||
Sbjct 1876708 AT 1876707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511414310502480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |