Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 5e-33
>seq3
Length=3048375
Score = 156 bits (172), Expect = 5e-33
Identities = 376/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| ||| |||||||| ||| || | |||||||| | ||| || | ||| |||||
Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| |||||||| ||||| ||||||||||| || | ||| || || || || || || ||
Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--- 24302
|| |||||||| || || || || || ||||| | | || || || | || |
Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1875102
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362
| || ||||| | | ||||| || |||||| |||| |||||||| || |||||
Sbjct 1875103 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCA 1875162
Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422
| ||||| || || || | || ||| || || | || ||||| || | |||
Sbjct 1875163 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1875222
Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482
|| | || || || ||||| || ||||| || |||||||| || | |||
Sbjct 1875223 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1875282
Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
|| | ||| || || | | || || || | | || || || || || || |||
Sbjct 1875283 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1875342
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 24598
||| ||||||||||| | ||||| | ||| | || | || |||| |
Sbjct 1875343 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1875401
Query 24599 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658
|||||||| || | || |||||| || | |||| ||||| | ||||| || || ||
Sbjct 1875402 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1875461
Query 24659 CTCTGCCTTTTTATACATATTCCAGAT 24685
|| || ||||| ||||| | ||||||
Sbjct 1875462 TTCAGCTTTTTTGTACATTTGCCAGAT 1875488
Score = 150 bits (166), Expect = 2e-31
Identities = 376/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| | ||| || ||||| ||| | || ||||| | |||||| | |||||| |||
Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || | || ||||| || || || || || ||||| || || || ||||| |||||
Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGCGC 24303
|| ||||| || |||||||| ||||| || || | | || || ||| || |
Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-AACGTCGACCG 1877094
Query 24304 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361
| |||| |||||| | | ||||| |||| ||||| || || || || || |||||
Sbjct 1877093 TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1877034
Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421
|| | ||| ||||| || | | | || | || ||||| || | ||
Sbjct 1877033 GATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAG 1876974
Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481
| || ||||||| ||||||||||| || ||||||||||| || ||||| | |
Sbjct 1876973 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGAC 1876914
Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541
|| | |||||||| | |||| || || | | ||| || || || || |||||
Sbjct 1876913 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1876854
Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601
|| ||||||||||||| |||| | ||| |||| ||||| | || ||
Sbjct 1876853 GGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1876794
Query 24602 A---TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658
| ||||| || ||||||||| || ||||| | ||||| |||||||| || ||
Sbjct 1876793 ATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1876734
Query 24659 CTCTGCCTTTTTATACATATTCCAGAT 24685
|| || || || ||||| | ||| ||
Sbjct 1876733 CTGGGCTTTCTTGTACATCTGCCAAAT 1876707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721496098720
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