Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq1 98.7 8e-16
>seq6
Length=2137015
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | |||||| ||||||||||| |||||||||||||| | || || || ||||
Sbjct 301044 AGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCT 300985
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| |||||||| | || | | |||||||||| ||| | ||| ||||| ||
Sbjct 300984 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 300925
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||||| | ||| || ||| | ||| || | ||||| |||
Sbjct 300924 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 300865
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || ||||| || ||||||||
Sbjct 300864 TTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300833
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 20968 CCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCA 21027
||| ||| | || |||||||| |||||||||||||| | ||||| || ||||||| |
Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699
Query 21028 GCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGA 21087
|||| |||||||| | || | | ||||||||| ||| | ||| |||||||| ||
Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639
Query 21088 TCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGC 21147
|||| || || | ||| || ||| | |||| || | || || ||||| |
Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579
Query 21148 CGGTTAACGTTTTGACAAATATTTGCAT 21175
| || ||||| || || || || |||||
Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCAT 300551
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/212 (69%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 20965 GCACC-ATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | || |||||||| || ||||||||||||| ||||| || |||||
Sbjct 300475 GCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCC 300416
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| |||||||| | || | | ||||||||| ||| | || ||||||||
Sbjct 300415 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCC 300356
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||||| | ||| || || | |||| || | ||| || |||
Sbjct 300355 TGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 300296
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || || | || || || || || |||||
Sbjct 300295 TTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300264
>seq1
Length=3403828
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| ||||| | ||||| || | ||||| ||||| ||||||
Sbjct 2304908 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2304849
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| ||||||| | ||| || ||| || | ||| ||||| || |||||| |||
Sbjct 2304848 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2304789
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || || | ||| |||| ||| ||||||||||| || | |||
Sbjct 2304788 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2304729
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 2304728 TTCACAAAGATCTGCAT 2304712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259127952024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |