Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 253 2e-62
seq6 138 1e-27
seq1 116 4e-21
>seq3
Length=3048375
Score = 253 bits (280), Expect = 2e-62
Identities = 402/572 (70%), Gaps = 11/572 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||||||||| || || ||||| |||||||| | ||| ||| ||||||||
Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| || || | | | ||||||| | ||| | |||||||| ||||| || || ||
Sbjct 1875428 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1875370
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| || || || ||||| |||||| || ||||||||||||||||| || || |||||
Sbjct 1875369 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1875310
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | | ||||| |||| ||| |||||||| ||||||||||| || || || ||
Sbjct 1875309 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1875250
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928
||| || | ||| || | || || || ||||| || ||| | | | ||
Sbjct 1875249 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1875190
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | || || | || | || | ||||| || || || |||||| ||||||
Sbjct 1875189 GCAACGCGAGTACC---TTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGC 1875133
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
|| ||||| || ||||||||| ||| | || | || | ||||| | || ||
Sbjct 1875132 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1875073
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
|||||| || || |||||| | ||||| || || ||||||| | || || ||| | ||
Sbjct 1875072 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1875013
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
||| || ||||||||||| || || || ||| ||| || |||||| | ||||||||
Sbjct 1875012 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1874953
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
||||| |||||| || || ||||||||||
Sbjct 1874952 AATGCATACCGACTTCGCATGCTTGCTGTTCA 1874921
Score = 212 bits (234), Expect = 6e-50
Identities = 394/573 (69%), Gaps = 13/573 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || ||
Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766
Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| || | ||||||| || | |||| || ||||| |||||||||||
Sbjct 1876767 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGATAACGAACGCCATTTCATATCA 1876826
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811
| || ||||| ||||| ||||| |||||| || ||||||||||||||||| |||||
Sbjct 1876827 TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1876886
Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||||| | || || || | || || | || || || || || ||||| ||| |
Sbjct 1876887 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGA 1876944
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC---GCTCTT 116927
|||| ||| | |||||||||| || || ||||||||| || ||| | | ||| |
Sbjct 1876945 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCCCTGACTC-T 1877003
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | | | ||| | | || || | |||||||| || || |||||||| |||||
Sbjct 1877004 CAGCAGCGTGGCTTC--CTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1877061
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||||||||| || | |||||| | | | | | | | || | | | | ||||||
Sbjct 1877062 CCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTGG 1877121
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| |||||||| || || || ||||||| || || ||| || | || || ||||| |
Sbjct 1877122 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1877181
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
||||||| || |||||||| || | || || ||||| || || ||||||| |
Sbjct 1877182 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1877241
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
| |||| || ||||||||| | ||||||
Sbjct 1877242 GGATGCACACAGATTTTGCCTGTCTCTTGTTCA 1877274
>seq6
Length=2137015
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||||||||| || || || |||| ||||| | |
Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| || || |||||||| ||| |||||||
Sbjct 300893 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300951
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| ||||| || |||||| ||
Sbjct 300952 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301011
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| |||| ||||||| ||
Sbjct 301012 CATTCAGAAGGAGTCCACCTTGCATCTCGT 301041
Score = 131 bits (144), Expect = 2e-25
Identities = 165/223 (74%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || |||||| |||| || || | |
Sbjct 300264 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300323
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| ||||| ||||| |||||| | |||||
Sbjct 300324 GACACGATCGATAACG-TGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCA 300382
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 300383 GCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 300442
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
||||||||||||| | || || ||||| | |||| ||||||
Sbjct 300443 CATCCAGAAGGAGTCGACCCTTCATCT--CGGTGCGTTTGAGG 300483
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || || || || ||||| |||| || || | |
Sbjct 300551 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300610
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 300611 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 300669
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 300670 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 300729
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||| ||||||||| | || || |||
Sbjct 300730 CATTCAGAAGGAGTCGACCCTCCAT 300754
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| || ||||| |||| ||||| | |
Sbjct 301061 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301120
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | |||||
Sbjct 301121 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 301179
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| || || || || | ||||| || ||||||||
Sbjct 301180 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 301239
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || |||||
Sbjct 301240 TATCCAGAAGGAGTCGACTCTTCATCT 301266
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || |||||||| || || ||||| | || ||||| | |
Sbjct 301336 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301395
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||||| || |||| ||||| || || || || | |||||
Sbjct 301396 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 301455
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||||||||| ||||| || |||| |||||||| ||||||||
Sbjct 301456 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 301515
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| ||| || || ||
Sbjct 301516 TATCCAGAAGGAGAGCACCCTTCACCT 301542
>seq1
Length=3403828
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || || ||||| ||||||||| | || ||||| | ||
Sbjct 2304712 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2304771
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| | || || | || || ||||||||||| |||| ||
Sbjct 2304772 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2304831
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | |||||||| ||||| || || | || ||||| ||||||||||
Sbjct 2304832 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2304891
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | ||||| || || ||
Sbjct 2304892 ATCCAGAAGGAGTCGACGCTTCACCTTGT 2304920
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | |||||||| |||||||| | || || || | |
Sbjct 2304145 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2304204
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 2304205 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2304264
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || |||||||| || || | |||||| || ||| |||||
Sbjct 2304265 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2304324
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || || ||
Sbjct 2304325 ATCCAGAAGGAGTCTACCCTTCACCT 2304350
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || | |
Sbjct 2304940 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2304999
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| || |||| ||||| || |||||||| ||||||||
Sbjct 2305000 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2305059
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | |||||||| || |||| |||| ||||| || || ||||||
Sbjct 2305060 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2305119
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| ||| || |||||
Sbjct 2305120 ATTCAGAAAGAGAGCACCCTCCATCT 2305145
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || | ||||| || || ||||| |||| ||||| | |
Sbjct 2304427 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2304486
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| ||||| || || || || | |||||
Sbjct 2304487 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2304545
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| |||||
Sbjct 2304546 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2304605
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| | || |||| ||
Sbjct 2304606 TATTCAGAAAGAGTCTACTTTGCACCT 2304632
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854
|||||| | || ||||| || ||||||| ||| ||||| ||||| || || | || ||
Sbjct 696102 ATCCCCCCTGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACA 696043
Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | |||||||||||||||||||||| | || || || || ||
Sbjct 696042 CTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 695999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219109836640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |