Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 3e-27
seq6 114 1e-20
>seq1
Length=3403828
Score = 136 bits (150), Expect = 3e-27
Identities = 158/212 (75%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587
||||||| || | ||||||||||| ||||| ||||||||| | ||| ||| |||||
Sbjct 2304637 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2304578
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| | ||| ||||||||| |||| | || ||||| |||||||| || || ||||||||
Sbjct 2304577 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2304518
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707
||| || || || | || | ||||||| ||||||||||| || | ||| |
Sbjct 2304517 GAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCT 2304458
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
| || |||| ||| ||||| ||||||||||||
Sbjct 2304457 TCCCCGTCAAAGTCTTTACGAAAATCTGCATG 2304426
Score = 125 bits (138), Expect = 6e-24
Identities = 155/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||| || | |||||||| || || || ||||||||| | |||||| ||||||
Sbjct 2304354 ACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTC 2304295
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| |||||| |||| ||||||||||| |||||||| || |||||||||||
Sbjct 2304294 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2304235
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||||||| ||| || || | || | || ||
Sbjct 2304234 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2304175
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||| |||| || || || || |||||||||
Sbjct 2304174 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2304144
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| | || || |||||||||||| || ||
Sbjct 2304908 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2304849
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| | || || ||||| ||||| || || ||||||||||| || || || |||
Sbjct 2304848 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2304789
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||||||||| | ||| | || ||||| ||||| |||
Sbjct 2304788 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2304729
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 2304728 TTCACAAAGATCTGCAT 2304712
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || |||||||| ||||||| || || ||||||
Sbjct 695999 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCATCCTCA 696058
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633
||||| || |||||| ||||||| ||||||||||| || || ||
Sbjct 696059 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGAT 696102
>seq6
Length=2137015
Score = 114 bits (126), Expect = 1e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || || ||||| || | |||||| ||||||||| || || |||
Sbjct 301257 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 301198
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | ||||| |||||||| || || || || ||||||||||| ||| ||| ||
Sbjct 301197 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTC 301138
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||||||||||| || | ||| ||||| ||||| ||
Sbjct 301137 ACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTC 301078
Query 118722 TTTACAAAAATCTGCATGGCT 118742
|| || || ||||||||| ||
Sbjct 301077 TTGACGAAGATCTGCATGCCT 301057
Score = 105 bits (116), Expect = 6e-18
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 118516 CGCGTAATCTCAA---CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||| || ||||| |||| || || | || ||||| || || ||||| || ||
Sbjct 300490 CGCGAAACCTCAAACGCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAA 300431
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||||| ||||||||||| || || ||| |||| | ||||||||| ||||| ||
Sbjct 300430 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGG 300371
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||||||||| ||| || || || | |||| ||||||| ||| |||
Sbjct 300370 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACC 300311
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|||| ||| | ||| || || || || || || || || ||||||||| ||
Sbjct 300310 TCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTCT 300260
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || |||||||| || ||| | |||||| || |||||||| || ||
Sbjct 301029 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 300970
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| || || || ||||||||||| ||| ||| || ||
Sbjct 300969 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300910
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||||||||||| || | ||| ||||| || || ||
Sbjct 300909 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300850
Query 118722 TTTACAAAAATCTGCAT 118738
|| || ||||| |||||
Sbjct 300849 TTGACGAAAATTTGCAT 300833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| || ||||| || |||||||| || || | ||||| |||||||
Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
|||| || || ||| |||| | |||||||| || || || |||||||||||||| |
Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || || || | |||| ||||| | ||| ||||||| || | ||| || |
Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579
Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
| |||| || || || || ||||||||| ||
Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 300547
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606
||| || || || ||||| || || ||||| ||||||||||| || || ||| |
Sbjct 301528 CTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 301469
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
||||| |||||||| |||||||| || || |||||||| ||| || || || |
Sbjct 301468 AATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATT 301409
Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| ||||||| ||||||||| | || | || || || || || || || ||
Sbjct 301408 GTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGAC 301349
Query 118727 AAAAATCTGCAT 118738
||| ||||||||
Sbjct 301348 AAAGATCTGCAT 301337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830325977688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |