Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq6 114 1e-20 >seq1 Length=3403828 Score = 136 bits (150), Expect = 3e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | ||||||||||| ||||| ||||||||| | ||| ||| ||||| Sbjct 2304637 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2304578 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | | ||| ||||||||| |||| | || ||||| |||||||| || || |||||||| Sbjct 2304577 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2304518 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | || | ||||||| ||||||||||| || | ||| | Sbjct 2304517 GAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCT 2304458 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || |||| ||| ||||| |||||||||||| Sbjct 2304457 TCCCCGTCAAAGTCTTTACGAAAATCTGCATG 2304426 Score = 125 bits (138), Expect = 6e-24 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||||| || || || ||||||||| | |||||| |||||| Sbjct 2304354 ACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTC 2304295 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| |||||| |||| ||||||||||| |||||||| || ||||||||||| Sbjct 2304294 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2304235 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||||| ||| || || | || | || || Sbjct 2304234 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2304175 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| || || || || ||||||||| Sbjct 2304174 GCCCGTCAATGTCTTGACGAAGATCTGCATG 2304144 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | || || |||||||||||| || || Sbjct 2304908 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2304849 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || ||||| ||||| || || ||||||||||| || || || ||| Sbjct 2304848 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2304789 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||| | ||| | || ||||| ||||| ||| Sbjct 2304788 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2304729 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2304728 TTCACAAAGATCTGCAT 2304712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||||||| || || |||||| Sbjct 695999 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCATCCTCA 696058 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 ||||| || |||||| ||||||| ||||||||||| || || || Sbjct 696059 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGGGGGGAT 696102 >seq6 Length=2137015 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| || | |||||| ||||||||| || || ||| Sbjct 301257 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 301198 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||| |||||||| || || || || ||||||||||| ||| ||| || Sbjct 301197 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTC 301138 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||| ||||| || Sbjct 301137 ACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTC 301078 Query 118722 TTTACAAAAATCTGCATGGCT 118742 || || || ||||||||| || Sbjct 301077 TTGACGAAGATCTGCATGCCT 301057 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118516 CGCGTAATCTCAA---CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||| || ||||| |||| || || | || ||||| || || ||||| || || Sbjct 300490 CGCGAAACCTCAAACGCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAA 300431 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||| || || ||| |||| | ||||||||| ||||| || Sbjct 300430 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGG 300371 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || | |||| ||||||| ||| ||| Sbjct 300370 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACC 300311 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| ||| | ||| || || || || || || || || ||||||||| || Sbjct 300310 TCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTCT 300260 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||| || ||| | |||||| || |||||||| || || Sbjct 301029 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 300970 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || ||||||||||| ||| ||| || || Sbjct 300969 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300910 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | ||| ||||| || || || Sbjct 300909 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300850 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 300849 TTGACGAAAATTTGCAT 300833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || |||||||| || || | ||||| ||||||| Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| |||| | |||||||| || || || |||||||||||||| | Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||| | ||| ||||||| || | ||| || | Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | |||| || || || || ||||||||| || Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 300547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || || ||||| || || ||||| ||||||||||| || || ||| | Sbjct 301528 CTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAA 301469 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||| |||||||| |||||||| || || |||||||| ||| || || || | Sbjct 301468 AATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATT 301409 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||||||||| | || | || || || || || || || || Sbjct 301408 GTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGAC 301349 Query 118727 AAAAATCTGCAT 118738 ||| |||||||| Sbjct 301348 AAAGATCTGCAT 301337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830325977688