Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq1 111 2e-19 >seq6 Length=2137015 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || |||||||| |||| ||| || || |||| || |||||||| || Sbjct 301533 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 301474 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| ||||| ||||||||||||| || | | ||||||||| ||| | || | || Sbjct 301473 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTT 301415 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | |||||| || || || || | |||||| || || ||||| || || Sbjct 301414 GACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGT 301355 Query 43166 CTTTACAAAGATTTGCATT 43184 ||| |||||||| |||||| Sbjct 301354 CTTGACAAAGATCTGCATT 301336 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || | ||||| || | || || || ||||| |||||||| Sbjct 301252 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 301193 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | | |||||||||| ||| | |||| | ||| Sbjct 301192 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTCACGT 301134 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || |||| |||||| || ||||| || || ||||| | Sbjct 301133 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 301074 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 301073 CGAAGATCTGCAT 301061 Score = 105 bits (116), Expect = 8e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035 ||||||| | || |||||| ||||| || || |||| || || || |||| || | Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699 Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095 ||||||| || ||||| || | ||||||||||| | || | || |||||||||| || Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639 Query 43096 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 | || |||| | | | |||||| || ||||| |||| |||||| || || | Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | |||||| || ||||| ||||| Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCAT 300551 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || ||| | || | |||||| ||| |||||| ||||| || || || | Sbjct 301059 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAA 301000 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 300999 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 300940 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||| | | ||| | || | || | | | | |||||| || || || Sbjct 300939 ATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGAC 300881 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||| || || |||||||| || ||||| || || |||||||| Sbjct 300880 CTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300833 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || | || || || |||| || |||||||| || ||||| Sbjct 300455 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 300396 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||||| || | | |||||||||| ||| | || | || | Sbjct 300395 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCC-TGAATCTTCGCCTTCACGT 300337 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 300336 TATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCA 300277 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 300276 CGAAGATCTGCAT 300264 >seq1 Length=3403828 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| | || || ||| | || || ||||| ||||||||||| Sbjct 2304336 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2304277 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | | |||||||||| ||| | || | |||| Sbjct 2304276 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 2304218 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||||| |||||||| | ||||| | Sbjct 2304217 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2304158 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 2304157 CGAAGATCTGCAT 2304145 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 42974 CACCAAA-TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCAT 43032 |||||| ||||| || ||| || |||||||||||||| | ||||| ||| | || | Sbjct 2304637 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2304578 Query 43033 CTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 43092 | | |||||| |||||||| || | || |||||||||| || | | ||||||||| Sbjct 2304577 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 2304519 Query 43093 TGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 ||| | || | | ||| | | | ||||| || || || |||| ||||| || Sbjct 2304518 TGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2304459 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| | |||||||| || || ||||| Sbjct 2304458 TTCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2304427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817499931920