Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 8e-22
seq1 104 2e-17
>seq6
Length=2137015
Score = 118 bits (130), Expect = 8e-22
Identities = 153/210 (73%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| || || |||||||||||||| || |||||||| ||| |||| |||| ||
Sbjct 301546 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 301487
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || || || ||||| || | ||||| ||||||||||| | || |||||||||
Sbjct 301486 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 301427
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
||| || ||| || | | ||||| | ||| ||||||| || || |||||
Sbjct 301426 AATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTT 301367
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || ||||| |||||||| |||||
Sbjct 301366 ACCCGTGAGGGTCTTGACAAAGATCTGCAT 301337
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||| ||||| || ||| |||| || || || || || |||||
Sbjct 300455 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 300396
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| ||||| |||||||| || | |||||||||||| ||| || ||| ||
Sbjct 300395 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 300336
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | ||||| | ||||||||| | ||| |||||||| || || || ||||||||
Sbjct 300335 ATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 300276
Query 45325 AAAGATTTGCATGT 45338
||||| |||||||
Sbjct 300275 GAAGATCTGCATGT 300262
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
|||| ||| ||||||||||||||| |||||| || ||| |||| || || ||
Sbjct 301035 TGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGC 300976
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
|| || ||||| ||||| ||||| ||||| || || | |||||||| || ||| ||
Sbjct 300975 TTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTC 300916
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | |||| | ||| ||||| | |||||||||||||||||
Sbjct 300915 GCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTG 300856
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || || ||||||||
Sbjct 300855 AGGGTCTTGACGAAAATTTGCAT 300833
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| || |||||||| || ||| | || || ||||| || || |||||
Sbjct 301252 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 301193
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| ||||| || || | ||||||||||||| ||| ||| ||| ||
Sbjct 301192 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 301133
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| ||| ||||| | || ||||||||||| ||||| ||||| ||
Sbjct 301132 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGAC 301073
Query 45325 AAAGATTTGCATG 45337
||||| ||||||
Sbjct 301072 GAAGATCTGCATG 301060
>seq1
Length=3403828
Score = 104 bits (114), Expect = 2e-17
Identities = 151/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185
||||||| || || || ||||||||| || ||||| ||| || ||| | || |
Sbjct 2304355 TACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCT 2304296
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| || ||||| || ||||| || | ||||| ||||||||||| | |||||||||||||
Sbjct 2304295 CAAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCT 2304236
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | ||||| | |||||| || | || || ||||
Sbjct 2304235 GAATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCT 2304176
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||||| ||||| || ||||| ||||||
Sbjct 2304175 TGCCCGTCAATGTCTTGACGAAGATCTGCATG 2304144
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
|||||| |||| || ||| |||||||| ||||| ||| || || | || ||
Sbjct 2304636 ACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTC 2304577
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || ||||| ||||| |||||||| || ||||||||||| | || |||||||||
Sbjct 2304576 CAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 2304517
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
||| || ||| || | | ||||| | ||| ||||| | || ||||||||
Sbjct 2304516 AATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTT 2304457
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||| |||||| || || || ||||||
Sbjct 2304456 CCCCGTCAAAGTCTTTACGAAAATCTGCATG 2304426
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185
|||| || || || |||||||| |||||||||||||| || ||| |||| |||| |
Sbjct 2305150 TACCCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCT 2305091
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
||| ||| || || || || |||| || || ||||| || || | || ||||||||
Sbjct 2305090 CCAATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTT 2305031
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
||| || ||| || | | ||||| | ||| ||||||| || || ||||
Sbjct 2305030 GAATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCT 2304971
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || ||||| || ||||| |||||
Sbjct 2304970 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2304940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395075132590294
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |