Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 165 7e-36 seq6 109 5e-19 seq1 107 2e-18 >seq3 Length=3048375 Score = 165 bits (182), Expect = 7e-36 Identities = 380/565 (67%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| || || | || ||||||||||| |||||| | || || Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||| | ||| ||| ||| ||| || || || | |||| || | Sbjct 1876767 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGATAACGAACGCCATTTCATATCA 1876826 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | || |||||||||| ||||| ||||| |||||||| ||||||||| |||| || | Sbjct 1876827 TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1876886 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| ||||| |||| | || | | || ||||| ||||||||| | || Sbjct 1876887 TTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATG 1876946 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | || || |||| || || || ||||||||||| ||| | | || Sbjct 1876947 GAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCCCTG---ACTCT 1877003 Query 57867 GAGAAACGTAG---ACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGGC 57922 || | ||| | || ||||| ||||||| || || || ||| || ||||| | Sbjct 1877004 CAGCAGCGTGGCTTCCTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGAAGAC 1877062 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCG 57981 |||||| | ||| ||||| | | |||| | ||||| ||| |||| | | | Sbjct 1877063 CGAGTGGGCCCTCAGGTGGAT-CTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTGG 1877121 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 ||||||| || || ||||| || ||||| || || ||||| |||| || ||| ||| Sbjct 1877122 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1877181 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 ||||||| || || ||||| || | || ||| ||||| |||| || ||||| | Sbjct 1877182 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1877241 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 | | || || |||||||| || || Sbjct 1877242 GGATGCACACAGATTTTGCCTGTCT 1877266 Score = 131 bits (144), Expect = 1e-25 Identities = 370/563 (66%), Gaps = 13/563 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||| || ||||| || || ||||| | |||||| | |||||| Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429 Query 57630 TCTAAGGATCTGAGCGATTGGGAT---TCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| ||| ||| || ||| || || |||| | | ||| | Sbjct 1875428 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1875369 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || | |||||||| ||||| || ||||| || || |||||||| | || || | Sbjct 1875368 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGC 1875309 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | | |||||| | ||||| ||||| || ||| | || Sbjct 1875308 TTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATG 1875249 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AA 57862 ||||| | || || | || || || || |||||||| ||| | |||||| | Sbjct 1875248 GAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAG 1875189 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||| || ||| || ||| | || | || || || || || | |||||| Sbjct 1875188 CAACGCGA---GTA-CCTTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGC 1875133 Query 57923 AGAGTGGTCAATCAAATGGAT-AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 || ||| || | ||||| | || | | |||| || || ||| | || ||| Sbjct 1875132 GGACTGGGCACTACGCTGGATCTCCGATCGTCGC-TCCACATTTGCTGAGCGATTAGTCG 1875074 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | |||||||| || || || || ||||| || || || || |||| || ||| ||| Sbjct 1875073 CCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGA 1875014 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || ||||| ||||| || || || || ||| || | || || ||||||| Sbjct 1875013 AGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGG 1874954 Query 58102 GTCTCCATACTGATTTTGCGTGC 58124 | | ||||| || || || ||| Sbjct 1874953 GAATGCATACCGACTTCGCATGC 1874931 >seq6 Length=2137015 Score = 109 bits (120), Expect = 5e-19 Identities = 157/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 301060 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 301119 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||| || | ||||| |||| Sbjct 301120 TGACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACC 301178 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||||||||| || | || || | | | ||| | || || Sbjct 301179 AGCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGA-TGGACGCACTCTTTCGGACTAC 301237 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || || |||||||||||||| ||||| Sbjct 301238 AATATCCAGAAGGAGTCGACTCTTCATCTCGGTAC 301272 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || ||||| ||||| || || || || ||||||||| |||| || || | | Sbjct 300262 ACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTT 300321 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 | |||| |||| | || || || || ||||||||| || | || ||||||| Sbjct 300322 CGGACACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACC 300381 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || ||||| ||||| ||| | || ||| || | || |||| Sbjct 300382 AGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATA 300441 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || || ||||| |||||||| Sbjct 300442 ACATCCAGAAGGAGTCGACCCTTCATCT 300469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| ||||| || |||| || || | || Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || || ||||| ||| | || || |||||| Sbjct 300893 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300952 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | |||||| ||| | ||| |||||| Sbjct 300953 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301012 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || || | ||||| || ||| Sbjct 301013 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTT 301045 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || || |||||||| |||| || || | || Sbjct 300550 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 300609 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 300610 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 300669 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| || | || ||||| Sbjct 300670 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 300729 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 |||||| || || ||||| || ||| ||| Sbjct 300730 CATTCAGAAGGAGTCGACCCTCCATTTGG 300758 >seq1 Length=3403828 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||||||||||||| |||| || || |||||||| |||| || || | || Sbjct 2304426 CATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2304485 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || || |||||||||||| | || |||||||| Sbjct 2304486 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2304545 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || |||||||| || |||||||| || ||| | |||||| || Sbjct 2304546 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2304605 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 ||||| ||||| || ||| | || || Sbjct 2304606 TATTCAGAAAGAGTCTACTTTGCACCT 2304632 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || ||||| | || || || | || Sbjct 2304144 CATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTC 2304203 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || || ||||||||| || | || |||||||| Sbjct 2304204 GGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCA 2304263 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || |||||||| |||||| | || || Sbjct 2304264 GCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGA 2304299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| || ||||| | || || || | || Sbjct 2304940 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2304999 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | ||||| |||||| Sbjct 2305000 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2305059 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| || ||||| ||| | || | ||||| ||| Sbjct 2305060 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2305119 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||||| ||||| || || ||||||| Sbjct 2305120 ATTCAGAAAGAGAGCACCCTCCATCTGG 2305147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880