Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 165 1e-35 >seq3 Length=3048375 Score = 165 bits (182), Expect = 1e-35 Identities = 378/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| |||||||| ||| |||| |||||||| | ||| || | ||| || || Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || |||||||| ||||| ||||||||||| || | ||| || || || ||||| || ||| Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33749 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1875102 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | || ||||| | | ||||| || |||||| |||| |||||||| || || || Sbjct 1875103 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCA 1875162 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | |||| || || || | || ||| || || | ||||||||||| | ||| Sbjct 1875163 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1875222 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1875223 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1875282 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || | ||| || || | | || || || | | || || || || || |||||| Sbjct 1875283 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1875342 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 34045 ||| ||||||||||| | ||||| | ||| | || | || |||| | Sbjct 1875343 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1875401 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 |||||||| || | || |||||| || | |||| ||||| | ||||| || || || Sbjct 1875402 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1875461 Query 34106 CTCTGCCTTTTTATACATATTCCAGAT 34132 || || ||||| ||||| | |||||| Sbjct 1875462 TTCAGCTTTTTTGTACATTTGCCAGAT 1875488 Score = 156 bits (172), Expect = 5e-33 Identities = 377/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| || ||||| ||||| || ||||| | |||||| | |||||||||| Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | || ||||| || || || || || ||||| || || ||||| || |||||| Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750 || |||||||| |||||||| || || || || | | ||| || ||| || | Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-AACGTCGACCG 1877094 Query 33751 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | |||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1877093 TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1877034 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || | ||| ||||| || | | | || | || |||||||| | || Sbjct 1877033 GATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAG 1876974 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 | || ||||||| ||||||||||| || || |||||||| || ||||| | | Sbjct 1876973 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGAC 1876914 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | || ||||| | |||| || || | | ||| || || || || || || Sbjct 1876913 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1876854 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 || ||||||||||||| |||| | ||| |||| ||||| | || || Sbjct 1876853 GGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1876794 Query 34049 A---TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 | ||||| || ||||||||| || ||||| | ||||| |||||||| || || Sbjct 1876793 ATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1876734 Query 34106 CTCTGCCTTTTTATACATATTCCAGAT 34132 || || || || ||||| | ||| || Sbjct 1876733 CTGGGCTTTCTTGTACATCTGCCAAAT 1876707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817489781920