Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 >seq3 Length=3048375 Score = 178 bits (196), Expect = 2e-39 Identities = 381/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| ||||| Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--- 50127 || ||||| || || || || ||||| ||||| || | || ||| || | ||| | Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1875102 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | || ||||| | | ||||| || |||||| |||| |||||||| || || || Sbjct 1875103 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCA 1875162 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | |||| || || || | || ||| || || | ||||||||||| | ||| Sbjct 1875163 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1875222 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1875223 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1875282 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | ||| || || | | || || ||| | | || || || || || || ||| Sbjct 1875283 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1875342 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----G 50423 ||| ||||||||||| | ||||| | ||| || || || | |||| | Sbjct 1875343 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATT-GTCGTTAAGGCG 1875401 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 |||||||| || | || |||||| || | || | ||||| | ||||| || || || Sbjct 1875402 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1875461 Query 50484 CTCTGCCTTTTTATACATATTCCAGAT 50510 || || ||||| ||||| | |||||| Sbjct 1875462 TTCAGCTTTTTTGTACATTTGCCAGAT 1875488 Score = 165 bits (182), Expect = 1e-35 Identities = 378/566 (67%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| | ||| || ||||| ||||| || ||||| | |||||| |||||||| ||| Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| || || || || || ||||| || || || ||||| || || Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC 50128 || |||||||| |||||||| || || || || || | ||| || | | | || Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1877093 Query 50129 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1877092 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1877033 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || | ||| ||||| || | | | || | || |||||||| | ||| Sbjct 1877032 ATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAGA 1876973 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||| ||||||||||| || || |||||||| || ||||| | | Sbjct 1876972 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1876913 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | || ||||| | |||| || || | | ||| || || || || ||||| Sbjct 1876912 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1876853 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || ||||||||||||| |||| | ||| ||||| |||||| | || ||| Sbjct 1876852 GAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTA 1876793 Query 50428 ---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 ||||| || ||||||||| || ||||| | ||||| |||||||| || ||| Sbjct 1876792 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1876733 Query 50485 TCTGCCTTTTTATACATATTCCAGAT 50510 | || || || ||||| | ||| || Sbjct 1876732 TGGGCTTTCTTGTACATCTGCCAAAT 1876707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268674302960