Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq1 120 7e-22 seq3 105 2e-17 >seq6 Length=2137015 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | |||||| || || || || || || ||| Sbjct 301527 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAA 301468 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 301467 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 301408 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 301407 TCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 301348 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 301347 AAGATCTGCATT 301336 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 301266 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 301207 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||| ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 301206 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 301147 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| ||| Sbjct 301146 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 301087 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 301086 GTCAGGGTCTTGACGAAGATCTGCAT 301061 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 300469 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300410 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || | | ||| || || || || ||||| || || ||||||||| Sbjct 300409 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 300350 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || || || ||||| || || || ||||| ||| Sbjct 300349 TTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300290 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 300289 GTGAGGGTCTTCACGAAGATCTGCAT 300264 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | ||||| || || || || || Sbjct 300747 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 300688 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 300687 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 300628 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 300627 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 300568 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 300567 TTCACGAAGATCTGCAT 300551 >seq1 Length=3403828 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 || || || ||||| |||||||||||||| || || || ||||||| || || || | Sbjct 2304632 AGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2304573 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || |||||||| || || | || || || || ||||| || ||||| || ||||||||| Sbjct 2304572 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2304513 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || || || ||||| || || || ||||| || Sbjct 2304512 TTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCC 2304453 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || |||||||| Sbjct 2304452 GTCAAAGTCTTTACGAAAATCTGCAT 2304427 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2305130 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2305071 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2305070 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2305011 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2305010 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAGGGTCTTGACG 2304951 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2304950 AAGATCTGCAT 2304940 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || || || || || | || || || || ||||| ||| Sbjct 2304341 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2304282 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 2304281 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2304222 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || || || ||||| || || | ||| Sbjct 2304221 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2304162 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2304161 TTGACGAAGATCTGCAT 2304145 >seq3 Length=3048375 Score = 105 bits (116), Expect = 2e-17 Identities = 364/557 (65%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | || | || ||||| ||||||| ||||| | || ||||| | || Sbjct 1875479 ATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTGTCAAAAGAT 1875420 Query 268802 TTAATAGATTGGAAAAAT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 | || ||||| || |||| || | || | ||| | || || | || Sbjct 1875419 CTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTCGCATGTCCT 1875361 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 ||||||||||| | |||||| ||||| ||||| || || || ||| |||| | Sbjct 1875360 CGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAA 1875301 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||| |||| || | || || ||||| ||||| || || |||||||| Sbjct 1875300 CGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAATAT 1875241 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || |||| ||| || | || |||||||| || | || || | || | Sbjct 1875240 CCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA-GCAACGCG 1875182 Query 269038 AAGACTATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | || ||||| | || | |||| | || ||||| | || || | || ||||| Sbjct 1875181 AGTACC-TTTTCGATGCTGTTGAGACC-ATTCCTTGTGTCAAAAGGAAGGCGGACTGGGC 1875124 Query 269095 TCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 || ||||| |||| | ||| || || | ||| | ||||| || || ||| Sbjct 1875123 ACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTTCGCC 1875066 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| | Sbjct 1875065 GCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGT 1875006 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | || Sbjct 1875005 GGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAATGCAT 1874946 Query 269270 TGCGACTTCGCTTGTTT 269286 ||||||||| || || Sbjct 1874945 ACCGACTTCGCATGCTT 1874929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912