Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq6 87.8 2e-12 >seq1 Length=3403828 Score = 113 bits (124), Expect = 4e-20 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AATC 94854 ||||||| ||||||||||| || || || | || |||||| | || ||| | ||| Sbjct 2304637 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCG--GAGAGAGTTCGCCCATC 2304580 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||| ||| ||||| | ||||| || | |||||| || |||||||| ||||| ||||| Sbjct 2304579 CTCCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTC 2304520 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||| || ||||| ||| | | | |||||| | ||||| || | ||||| || Sbjct 2304519 CTGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGT 2304460 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | ||| || || || |||||||||| Sbjct 2304459 CTTCCCCGTCAAAGTCTTTACGAAAATCTGCATGC 2304425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||| ||||| || | || |||||| | ||| |||||| Sbjct 2304354 ACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTC 2304295 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || | ||||| | | ||||| || ||||| ||||| || ||||| | Sbjct 2304294 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2304235 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||||| | ||| |||||| | || || |||| |||||||| || Sbjct 2304234 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2304175 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||||||||||| Sbjct 2304174 GCCCGTCAATGTCTTGACGAAGATCTGCATGC 2304143 >seq6 Length=2137015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || || | || || | | ||||| || || || ||||| || || Sbjct 301216 ATCCTCGAGTTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 301157 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| ||| | ||| ||||||| ||||| || | |||||| Sbjct 301156 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGAT 301097 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || || ||||||||||||| Sbjct 301096 CGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGC 301059 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94800 CCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | || || ||||| || | |||||| || | ||| | ||||| | Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | ||||| || | ||||| || || || || || || ||||| | | Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| ||| ||||||| || || || | |||||| || |||| Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| | || ||||| ||||||||||||| Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCATGC 300549 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | || || | | ||||| || |||||||| ||||| ||| Sbjct 301491 TCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTG 301432 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| ||||| | ||||| || | |||||| Sbjct 301431 TCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATT 301372 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 301371 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291121549040