Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3 168 8e-37
>seq3
Length=3048375
Score = 168 bits (186), Expect = 8e-37
Identities = 380/567 (67%), Gaps = 8/567 (1%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| | ||| || ||||| ||||| || ||||| | |||||| |||||||| |||
Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || | || ||||| || || || || || ||||| || || ||||| || |||||
Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472
|| |||||||| |||||||| || || || || | | ||| || ||| || |
Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-AACGTCGACCG 1877094
Query 33473 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
| |||| |||||| | | ||||| |||| ||||| || || || || || || ||
Sbjct 1877093 TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1877034
Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590
|| | ||| ||||| || | | | || | || |||||||| | ||
Sbjct 1877033 GATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAG 1876974
Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650
| || ||||||| ||||||||||| || || |||||||| || ||||| | |
Sbjct 1876973 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGAC 1876914
Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710
|| | |||||||| | |||| || ||| ||| ||| || || || || |||||
Sbjct 1876913 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1876854
Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770
|| ||||||||||||| |||| | ||| |||| ||||| | || ||
Sbjct 1876853 GGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTT 1876794
Query 33771 A---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827
| ||||| || ||||||||| || ||||| | ||||| |||||||| || ||
Sbjct 1876793 ATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGC 1876734
Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854
|| || || || ||||| | ||| ||
Sbjct 1876733 CTGGGCTTTCTTGTACATCTGCCAAAT 1876707
Score = 159 bits (176), Expect = 4e-34
Identities = 377/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| |||||
Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| |||||||| ||||| ||||||||||| || | ||| || || || ||||| || ||
Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33471
|| ||||| || || || || || || ||||| | | || ||| || | || |
Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1875102
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| || ||||| | | ||||| || |||||| |||| |||||||| || || ||
Sbjct 1875103 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCA 1875162
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
| |||| || || || | || ||| || || | ||||||||||| | |||
Sbjct 1875163 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1875222
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651
|| | || || || ||||| || || || || |||||||| || | |||
Sbjct 1875223 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1875282
Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711
|| | ||| || || | | || || || | | || || || || || || |||
Sbjct 1875283 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1875342
Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 33767
||| ||||||||||| | ||||| | ||| | || | || |||| |
Sbjct 1875343 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1875401
Query 33768 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827
|||||||| || | || |||||| || | || | ||||| | ||||| || || ||
Sbjct 1875402 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1875461
Query 33828 CTCTGCCTTTTTATACATGTTCCAGAT 33854
|| || ||||| ||||| | ||||||
Sbjct 1875462 TTCAGCTTTTTTGTACATTTGCCAGAT 1875488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622947090984240
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