Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq6 89.7 3e-13
>seq1
Length=3403828
Score = 91.5 bits (100), Expect = 1e-13
Identities = 176/260 (68%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||| |||| || || || ||||| || |||||||| || ||||||| | || || ||
Sbjct 3375924 AAGATCGAAGGCAAAGGCAACGGCATCAAAACCGTGATCCCCAACATGTCCGACGTAGCG 3375865
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|| || ||||| ||||||||||||| |||| ||||| | || || || ||
Sbjct 3375864 CGCGCACTTTCCCGCCCGCCCACCTACCCGACCAAATTCTTCGGCTCTGAGCTCGGTGCG 3375805
Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413
|||||| | || | || ||||| || | |||||| || || |||| | | |||
Sbjct 3375804 CAGACGACCGTCGACGAGAAGAACGACCGTTACATCGTCAATGGCGCGCACGATGCCGCC 3375745
Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473
|||| || | || || | || || |||||| |||||||| | | ||| |
Sbjct 3375744 CGCCTGCGCGAGCTCCTCGATGCGTTCATCGACAAGTTCGTGCTGTGCGGCGCGTGCAAG 3375685
Query 6474 AACCCGGAGACCGAGCTTAT 6493
||||||||||| || || ||
Sbjct 3375684 AACCCGGAGACGGACCTCAT 3375665
>seq6
Length=2137015
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/211 (70%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 38108 CACCAAA-TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166
|||||| ||||| ||||||||||| || |||||||| ||||||| || |||| |
Sbjct 301547 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301488
Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226
| | || || || || || || ||||| || || |||| || | ||||| ||||||
Sbjct 301487 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301428
Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286
||| || ||| ||||| | || || || | || || || | || || || |
Sbjct 301427 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCT 301368
Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||| | ||| || || || ||||||||
Sbjct 301367 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 301337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947142849634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |