Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 188 8e-43
seq10 86.0 7e-12
>seq3
Length=3048375
Score = 188 bits (208), Expect = 8e-43
Identities = 381/560 (68%), Gaps = 9/560 (2%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||| || || || | |||||||| || |||| || || || ||||||
Sbjct 1877263 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1877204
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || ||||||||||| ||||| || |||||||||||| || || || ||
Sbjct 1877203 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1877144
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGCT 93270
|| ||||| || || || || ||||| | | |||||| | | | | | |
Sbjct 1877143 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGTTGGTCAGA- 1877085
Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330
|||||| | | ||||| |||| || | ||| | || |||| || ||||| | ||
Sbjct 1877084 GATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATT 1877025
Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390
|| ||| | | |||| | || || | ||||| |||||||| | ||||| || |
Sbjct 1877024 GAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAGAGAGTATGT 1876965
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
||| || || | || ||||| ||||| ||||| || ||||| | |||| | |
Sbjct 1876964 TTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGC 1876905
Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510
|| ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || ||
Sbjct 1876904 TTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGC 1876845
Query 93511 aaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---C 93565
|||||| |||| | ||||| | || ||||| || | ||| || || ||||| |
Sbjct 1876844 AAAAAACGCCAGGACATATGAT--ATGAAATGGCGTTCGTTATCATTCAGGTTATCGTTC 1876787
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| ||| | | |||||| || | ||||| |||||| ||||||||||| || | |||
Sbjct 1876786 CAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCT 1876727
Query 93626 TTTTTGTACATATCCCATAT 93645
|| |||||||| | ||| ||
Sbjct 1876726 TTCTTGTACATCTGCCAAAT 1876707
Score = 179 bits (198), Expect = 4e-40
Identities = 381/568 (67%), Gaps = 3/568 (1%)
Strand=Plus/Plus
Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140
|| ||| ||||| || ||||||||||| | || ||||| || || | ||||||
Sbjct 1874921 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1874980
Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200
||| || | || || | || || || ||||| | ||| || ||||| || ||| ||
Sbjct 1874981 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1875040
Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260
| || || || || || ||||| || || || || || | || || ||||| | | |
Sbjct 1875041 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1875100
Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320
| | | |||||| || ||||| || || || | || | |||||| | || |
Sbjct 1875101 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCT 1875160
Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380
| | ||| | || ||||| || || | | | || ||||| |||||||| | |
Sbjct 1875161 CAACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1875220
Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440
| || || | || |||| ||| ||||| ||||||||| |||||||| || | |
Sbjct 1875221 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1875280
Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500
| || | ||| || || | || || | ||| || || || || ||||| || ||||
Sbjct 1875281 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1875340
Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559
| || || |||||||| || | | |||| | ||| || ||||| || |||||
Sbjct 1875341 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1875400
Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617
|||| ||| ||| ||||||||||| || || | |||||| ||||||| || || |
Sbjct 1875401 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1875460
Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645
|||| |||||||||||||| | ||| ||
Sbjct 1875461 CTTCAGCTTTTTTGTACATTTGCCAGAT 1875488
>seq10
Length=1436600
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332
|||||||| |||||||||||||||| | | |||||||| || ||||| ||||||||||||
Sbjct 697594 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 697653
Query 126333 ACCCCAC 126339
| |||||
Sbjct 697654 ATCCCAC 697660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860702549360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |