Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 6e-16
seq6 96.9 7e-15
seq2 96.9 7e-15
>seq3
Length=3048375
Score = 100 bits (110), Expect = 6e-16
Identities = 117/157 (75%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| || | ||| |||| || |||||| | |||||||||||||||||||||||
Sbjct 1874612 TCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATCATGTCCATGAAGTCGAAGGGGTTTGTC 1874671
Query 251623 GCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679
|| ||||| ||||| | |||| || || | || | |||||||| ||||||||
Sbjct 1874672 GCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGACGGTCTGCAACAAACTCG 1874728
Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716
| ||||| | ||| || | | |||||||||||||
Sbjct 1874729 ATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1874765
>seq6
Length=2137015
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763
||| || |||||||||||||||||||| |||||| | |||||||| | | || ||
Sbjct 629086 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCTGA 629027
Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823
|||| |||| || ||||| || |||||| ||||| |||||| |||||| | |
Sbjct 629026 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGTTGGA 628967
Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883
| |||| | ||| | || | | | ||| |||| ||||| |||||||| |||||
Sbjct 628966 GAACTACTTGACCGGCCTCACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 628907
Query 279884 CCT 279886
|||
Sbjct 628906 CCT 628904
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
|||| | || ||||| ||| | || ||||| || || ||||| | || |||| ||||
Sbjct 628615 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 628556
Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288
|| | | |||| || | | |||||||| |||||| || || | ||| || ||
Sbjct 628555 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGTTATGTTGC 628496
Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348
|||||||| |||||||||||||| ||||| || |||| ||| || | | |||||
Sbjct 628495 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGTT 628436
Query 280349 GTGGCGCTA 280357
|||||| ||
Sbjct 628435 GTGGCGTTA 628427
>seq2
Length=3087500
Score = 96.9 bits (106), Expect = 7e-15
Identities = 151/211 (72%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231
|||| |||| || ||||| | || || || || || |||| | || ||||||||||
Sbjct 526916 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTCACTGGCGAGAT 526975
Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288
|||||| |||| || | | |||||||| || ||| || || | ||||||||
Sbjct 526976 GGAGGCCAACAAGGGCGGTGAGGTGTGGAAGCACCCTAACTTGGTCATCGGCTACGTCGC 527035
Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348
|| ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| |
Sbjct 527036 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 527095
Query 280349 GTGGCGCTATGCAAGTGGGC-AGGATCTGGA 280378
||||| || || |||| ||||||||||
Sbjct 527096 CTGGCGGTA-CCAGACGGGCGAGGATCTGGA 527125
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764
|| || |||||||||||||||||||| || ||| |||| || || || | ||||||
Sbjct 526446 CTTTCTGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCCGAT 526505
Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824
|||| |||| |||||||| || ||||| |||| | |||||| |||||||| |
Sbjct 526506 ATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGAA 526565
Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884
|||||| || | || | | |||| |||| ||||| ||||||||||| ||
Sbjct 526566 AGCTACCTCACTGGCCTTACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTTT 526625
Query 279885 CT 279886
||
Sbjct 526626 CT 526627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836615631774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |