Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 100 6e-16 seq6 96.9 7e-15 seq2 96.9 7e-15 >seq3 Length=3048375 Score = 100 bits (110), Expect = 6e-16 Identities = 117/157 (75%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| |||| || |||||| | ||||||||||||||||||||||| Sbjct 1874612 TCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATCATGTCCATGAAGTCGAAGGGGTTTGTC 1874671 Query 251623 GCATTGTACTGCTTGGGATGGCCA---AGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 || ||||| ||||| | |||| || || | || | |||||||| |||||||| Sbjct 1874672 GCGTTGTAGTGCTT---TTCGCCACCGAGGGCAATGAGCAGACGGTCTGCAACAAACTCG 1874728 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 | ||||| | ||| || | | ||||||||||||| Sbjct 1874729 ATGTACTGGCACATGAGCTTGGCATTCATGCCAATCA 1874765 >seq6 Length=2137015 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| |||||| | |||||||| | | || || Sbjct 629086 TCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGTTGTTCAAGGCTGA 629027 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 |||| |||| || ||||| || |||||| ||||| |||||| |||||| | | Sbjct 629026 CATCCTGTTGCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTTGCCTGGTTGGA 628967 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||| | ||| | || | | | ||| |||| ||||| |||||||| ||||| Sbjct 628966 GAACTACTTGACCGGCCTCACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTT 628907 Query 279884 CCT 279886 ||| Sbjct 628906 CCT 628904 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| | || ||||| ||| | || ||||| || || ||||| | || |||| |||| Sbjct 628615 TGTCCTCGGCCCCAACGGTTCCGGAAAGTCGACGCTCGTCAAATTGCTCACTGCGGAGAT 628556 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 || | | |||| || | | |||||||| |||||| || || | ||| || || Sbjct 628555 GGAGCCGAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTCATCGGTTATGTTGC 628496 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||||| ||||| || |||| ||| || | | ||||| Sbjct 628495 CCAGCACGCCTTCCACCACATCGATAACCATCTCGACAAGACGCCCCTCGAGTACATGTT 628436 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 628435 GTGGCGTTA 628427 >seq2 Length=3087500 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| || ||||| | || || || || || |||| | || |||||||||| Sbjct 526916 TGTCCTTGGCCCTAATGGCTCCGGCAAATCCACGCTCGTCAAGTTGCTCACTGGCGAGAT 526975 Query 280232 CCAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||||| |||| || | | |||||||| || ||| || || | |||||||| Sbjct 526976 GGAGGCCAACAAGGGCGGTGAGGTGTGGAAGCACCCTAACTTGGTCATCGGCTACGTCGC 527035 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 || ||||||||||||||||| || ||||||| |||| ||| ||| | ||||| | Sbjct 527036 CCAACACGCTTTCCACCACATTGATCACCACCTCGACAAGACGCCTTTGGAGTACATGCT 527095 Query 280349 GTGGCGCTATGCAAGTGGGC-AGGATCTGGA 280378 ||||| || || |||| |||||||||| Sbjct 527096 CTGGCGGTA-CCAGACGGGCGAGGATCTGGA 527125 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || ||| |||| || || || | |||||| Sbjct 526446 CTTTCTGGTGGTTGGAAGATGAAGCTCGCTCTCGCTCGTGCGATGCTCTTCAAGGCCGAT 526505 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| |||| |||||||| || ||||| |||| | |||||| |||||||| | Sbjct 526506 ATCCTCTTGCTCGATGAGCCGACTAACCATTTGGATGTCGTCAACGTTGCCTGGCTCGAA 526565 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| || | || | | |||| |||| ||||| ||||||||||| || Sbjct 526566 AGCTACCTCACTGGCCTTACCCACTGCACTTCGATCATCGTCTCGCACGACTCTGGGTTT 526625 Query 279885 CT 279886 || Sbjct 526626 CT 526627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836615631774