Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 183 6e-41 seq5 96.9 7e-15 >seq3 Length=3048375 Score = 183 bits (202), Expect = 6e-41 Identities = 321/462 (69%), Gaps = 19/462 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || || ||||||||||| ||||| ||||| |||||||| | | ||| | Sbjct 1875362 CTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1875303 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 1875302 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1875243 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598 | ||| ||| ||| || || || | || |||||| ||| || | || Sbjct 1875242 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1875183 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | | ||| | || | ||||| || || || |||| | |||||||||||| Sbjct 1875182 GAGTACC----TTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGCGGACTG 1875127 Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||| || ||| | | || || | ||| | | || ||||| Sbjct 1875126 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1875070 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| | Sbjct 1875069 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1875010 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 1875009 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1874951 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||||| ||||| || ||| | |||||| ||||| |||| Sbjct 1874950 TGCATACCGACTTCGCATGCTTGCTGTTC---AGCCATCTCA 1874912 Score = 140 bits (154), Expect = 6e-28 Identities = 375/563 (67%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || ||| || ||||| |||| ||||| || || |||| || Sbjct 1876716 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1876775 Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | || || ||| |||||| |||| | | | | ||| Sbjct 1876776 ATCTTCGACTGGAACGATAACCTGAATGATAACGAACGCCATTTCATATCATATGTCCTG 1876835 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || || || ||||| || ||||| || ||||| ||||| |||| |||| || Sbjct 1876836 GCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1876895 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||| | ||||| || || || || || || || || ||| | Sbjct 1876896 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATGGAAAACATT 1876955 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGA-TCCCGTCGAGCGTAA 42604 ||||| || ||| | || || | || ||||||| || || | | ||||| Sbjct 1876956 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATCCCTGACTCTCAGC-AGCGTGG 1877014 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| || Sbjct 1877015 CTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1877074 Query 42665 CAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || |||||| || || ||| | ||||| | | |||| |||| || || | || Sbjct 1877075 CAGGTGGATCTCTGA---CCAACGGTCGACGTTTGCCACGAGGTTGGTGGCGTTCGCGGC 1877131 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGG 42780 || || || ||||||||||| || | || || || ||||||||||| ||| | ||| Sbjct 1877132 GGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGG 1877191 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || | ||||| || |||||||| || || ||||||| ||| |||| | Sbjct 1877192 TCTC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCACA 1877250 Query 42841 GGGACTTTGCCTGCCTCCTGTTC 42863 || |||||||| ||| ||||| Sbjct 1877251 CAGATTTTGCCTGTCTCTTGTTC 1877273 >seq5 Length=2295515 Score = 96.9 bits (106), Expect = 7e-15 Identities = 200/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 |||| | ||||||||| | || || | | || |||||||| |||| || ||| | Sbjct 538307 CCCAAAGGTCAAACTGTAAGAGGCCTTCGGACACAGGGCTGCCAGAATAGGACGAGTACG 538248 Query 244359 GACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | ||||| || ||||| || ||| || | || | || || | ||| || |||||| Sbjct 538247 GGCCGTCTTTCTTGGCCATCTCGACA-CTAGCTTCCACAGCAGCATGGTATATTGTCTCG 538189 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCA 244475 |||||| || |||| | ||| |||| | ||| | |||||| |||| || |||| Sbjct 538188 AAGATCTGCTGATTCAGCTTGCGCGCCTG--CTCAGATTCGAAGGGCATGCGCAAGATCA 538131 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 |||| || || || ||||||||||||| || | || | || ||| |||||||| Sbjct 538130 TGAAAGTATCCGCAAGGCCCTGCACGCCGAGACCAGTAGGGCGATGACGCATGTTGGAGT 538071 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || || || |||||||| ||||| ||||||| | ||| |||||| Sbjct 538070 TACGTGCCTCAGGAACGGGGTAGTAGTTGACGTCGATAATACAGTTCAGGTTG 538018 Score = 89.7 bits (98), Expect = 1e-12 Identities = 201/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 ||||| | |||||| |||| || || | | |||| |||||||| ||||| || || Sbjct 540225 CCCCAAAGGTCAAATTGCAACAAGCCTTCG--GACGCAGGGCTGCCAGAGTAGGACGAGT 540168 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 | || || || || |||| || ||| || | || | ||||| | ||| || ||| Sbjct 540167 ACGGGCCATCTTTCTCAGCCATCTCGACA-CTAGCTTCCACAGCGGCATGGTATATTGTC 540109 Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 ||||||||| || |||| | ||| |||| | | || || |||| || ||| Sbjct 540108 TCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATC 540049 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG-A 244533 ||||| || || || ||||||||||||| || || || | ||| ||| |||||| | Sbjct 540048 ATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAA 539989 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || | || || |||||||| ||||| ||||||| | ||| |||||| Sbjct 539988 TTACGTGAC-TCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTG 539935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339034740640