Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 136 9e-27 seq1 129 1e-24 seq9 96.9 8e-15 >seq6 Length=2137015 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || |||||||| ||||| | || |||||||| || || | Sbjct 301268 CGAGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGA 301209 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 ||| || || ||||| || || ||||| || | ||||| || || || ||||| | Sbjct 301208 GTTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAA 301149 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || |||||||| || || | || ||| || || ||||||||||||||||| | Sbjct 301148 TCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGC 301089 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||||||||| |||||||| Sbjct 301088 CAGTCAGGGTCTTGACGAAGATCTGCAT 301061 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 288266 CGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTA 288325 ||||||||| || || || ||||| |||||||| | || ||||| ||||| || | Sbjct 300471 CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGA 300412 Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 || || || |||||||||| |||||| || |||||||| || || ||||| | Sbjct 300411 GCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAA 300352 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | ||||| |||||||| || || | || || || || ||||| ||||||||||||| Sbjct 300351 TCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCC 300292 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| |||||||| Sbjct 300291 CAGTGAGGGTCTTCACGAAGATCTGCAT 300264 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| |||||||| | ||| || || || || ||||||| Sbjct 301063 CATG-CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGT 301005 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| |||||||| | || || || |||||||||| ||||| || | Sbjct 301004 CGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGG---T 300948 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||| || || ||||| |||||||| || || | || | Sbjct 300947 CCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAG 300888 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||| |||||||| || || || ||||||||||| || ||||| Sbjct 300887 ACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300833 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | || ||||| ||||| || | || || || |||||| Sbjct 300741 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300682 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||||| || || || |||||||| || || || ||||| Sbjct 300681 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 300622 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||||||||||||||| || |||| ||||| ||| Sbjct 300621 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 300562 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 300561 AAGATCTGCAT 300551 >seq1 Length=3403828 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || |||| ||| || || || || || || || ||||| |||||| Sbjct 2304617 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2304558 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || || || ||||| || ||||| || ||||| |||||||| Sbjct 2304557 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2304498 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || || ||||| |||||||||||||| |||| |||||| ||| Sbjct 2304497 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2304438 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2304437 AAAATCTGCAT 2304427 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || |||| |||||||| || || || | ||||| || |||||| Sbjct 2304335 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2304276 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || || ||||| || ||||| || || || Sbjct 2304275 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2304216 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || ||||| || ||||| ||||| || |||| ||||||||| Sbjct 2304215 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2304156 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2304155 AAGATCTGCAT 2304145 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || || |||| ||| || || ||||| || ||||||| Sbjct 2304938 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2304879 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || || || ||||||||| |||| Sbjct 2304878 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2304819 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||||||| || || || || | ||| ||| || || Sbjct 2304818 ATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACC 2304759 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 2304758 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2304712 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||| | ||||| ||||| || || || || || | || ||||| ||||| || ||| Sbjct 2305145 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2305086 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || || ||||| || || || ||||| ||||| || || || || Sbjct 2305085 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2305026 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| ||||| || || || | || || ||||| || | |||||| ||||| || Sbjct 2305025 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2304966 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 2304965 GTGAGGGTCTTGACGAAGATCTGCAT 2304940 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || |||||||| || || || || || || || || | |||| || || || || Sbjct 2303968 CCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCA 2303909 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 |||||||| ||||| ||||| |||||||||||||| |||||||| ||| ||| Sbjct 2303908 AGCGTGATAGTCTTGCCGGTGAGAGTCTTGACGAAGATCTGCATGATGATAT 2303857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || ||||| ||||| || || | || || || || || Sbjct 696165 CCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCA 696224 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||||||||| || || ||||||||||| ||||||||| Sbjct 696225 AGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATT 696269 >seq9 Length=1647769 Score = 96.9 bits (106), Expect = 8e-15 Identities = 193/279 (69%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 326078 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 326137 || ||||| ||||||| || ||||| || | || ||| | ||| |||| | Sbjct 1406086 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1406145 Query 326138 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 326196 | || ||||| | ||| | |||| | ||| |||||||||||||||| |||| || | Sbjct 1406146 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1406203 Query 326197 CACGGAT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 326255 || | | || ||||| ||||| | | ||| || ||||| ||||| |||||| | | | Sbjct 1406204 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1406263 Query 326256 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 326315 |||| ||||| || || ||| || | ||||| | | || ||||| || || || | Sbjct 1406264 CGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGA 1406323 Query 326316 GAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 326352 |||| ||||| |||||| | || || |||| ||||| Sbjct 1406324 GAATAAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1406360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654188399492