Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq9 91.5 3e-13
seq3 87.8 4e-12
>seq9
Length=1647769
Score = 91.5 bits (100), Expect = 3e-13
Identities = 192/279 (69%), Gaps = 8/279 (3%)
Strand=Plus/Plus
Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 298258
|| ||||| ||||||| || ||||| || | || ||| | ||| |||| |
Sbjct 1406086 TCCGTCATAATCATCAACTGGCCGTACCGCAAACTCGAGATGTTCGTATACTCTTTGTTG 1406145
Query 298259 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 298317
| || ||||| | ||| | |||| | ||| |||||||||||||||| |||| || |
Sbjct 1406146 CTCTGGAGGCCCATAATCTTCTTGATGTTCTG-GATTTCTTCGTTCTTCATGAT-CTGGT 1406203
Query 298318 CACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 298376
|| | | || ||||| || || | | ||| || ||||| ||||| |||||| | | |
Sbjct 1406204 CATGCCTAGCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTAT 1406263
Query 298377 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 298436
|||| ||||| || || ||| || | ||||| | | || ||||| || || || |
Sbjct 1406264 CGCGCCCGACGACACCCAACCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGA 1406323
Query 298437 GAATGAGAGTGCACATTTTGCTG--TTATTCGTTCCAGC 298473
|||| ||||| |||||| | || || |||| |||||
Sbjct 1406324 GAATAAGAGT--ACATTTAGATGCATTCCTCGTCCCAGC 1406360
>seq3
Length=3048375
Score = 87.8 bits (96), Expect = 4e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619
|||| ||||||||||| | | |||||| | ||||||||||| || || || |||||
Sbjct 1874768 GGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTC 1874709
Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679
| |||| || || ||| || || |||||| | | |||||||| | ||| ||||
Sbjct 1874708 TGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTCATGG 1874649
Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725
| | || || | || ||||| || |||||||| || ||||| ||
Sbjct 1874648 ACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1874603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879802170900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |