Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq5 102 8e-17
seq1 98.7 1e-15
seq3 89.7 5e-13
>seq6
Length=2137015
Score = 104 bits (114), Expect = 2e-17
Identities = 145/200 (73%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || || |||||||| | ||| || ||||||||||| || || |
Sbjct 301254 GACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCG 301195
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || || ||||| ||||| || || ||||| || ||||| ||| | |||| || |
Sbjct 301194 AAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTTGCCTTCAC 301136
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | |||||| ||||||| ||| | ||| || |||||||| || |
Sbjct 301135 GTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCT 301077
Query 138599 TTACAAAAATCTGCATGGCT 138618
| || || ||||||||| ||
Sbjct 301076 TGACGAAGATCTGCATGCCT 301057
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 138409 AAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGT 138468
||||| | | | |||||||| |||||||| ||||| | || || |||||||||
Sbjct 300756 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGC 300697
Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528
|| || || | |||| | ||||| ||||| || || || || || ||||| |||
Sbjct 300696 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 300637
Query 138529 TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588
|| || | | || | ||||| | ||||||||||||| ||| | ||| || |||
Sbjct 300636 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 300577
Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|||| || || || || ||||||||| ||
Sbjct 300576 GTCAACGTCTTCACGAAGATCTGCATGCCT 300547
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/231 (70%), Gaps = 5/231 (2%)
Strand=Plus/Minus
Query 138396 CAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACG 138455
|||||||| | | ||| | | | |||||||| || ||||| ||||| | || ||
Sbjct 300480 CAAACGCAC--CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCG 300423
Query 138456 CGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC 138515
||||||||| || || || | |||| | |||||| ||||| || || || || ||
Sbjct 300422 GCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTC 300363
Query 138516 TTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCG 138574
||||| ||| | || | || | | || | ||||| | ||||||||||||| |
Sbjct 300362 CTTGTCC-TGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGG 300304
Query 138575 TCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATA 138625
| | ||| || ||||| || || || || || ||||||||| | |||||||
Sbjct 300303 TGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTC-TATAATA 300254
>seq5
Length=2295515
Score = 102 bits (112), Expect = 8e-17
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 154283 CAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGC 154342
|| ||||||||| | || ||| ||| || | || ||||| ||||| || || ||
Sbjct 536759 CAGGAAACACGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGC 536700
Query 154343 GTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402
||| || || || | ||||| | ||| ||||| || ||| |||| |||| |
Sbjct 536699 GTGAGTGAAGTAACGTTCGGACATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGC 536640
Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
|||||||||||||| || |||||||||| ||||||||| |||||||| |||||
Sbjct 536639 GCCGTGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGAC 536586
>seq1
Length=3403828
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || |||||||| || || || | |
Sbjct 2304905 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2304846
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || || |||||||| ||||| || || || || || || ||| || ||| |
Sbjct 2304845 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2304786
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| |||||| ||||| | || | || || |||||||| |||||
Sbjct 2304785 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2304726
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 2304725 ACAAAGATCTGCAT 2304712
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || ||||| ||||| ||| | ||| ||| ||||| | || || || |
Sbjct 2304620 GACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCG 2304561
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| | || || ||||| ||||| || ||||| ||||| ||| | || | || |
Sbjct 2304560 AAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCAC 2304502
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| | | ||||| | ||||| ||||||| || | ||| || || |||| ||| |
Sbjct 2304501 GTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCT 2304443
Query 138599 TTACAAAAATCTGCATG 138615
|||| ||||||||||||
Sbjct 2304442 TTACGAAAATCTGCATG 2304426
>seq3
Length=3048375
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709
|| || || || | |||| | |||||||| || || ||||||| ||||||||||||||
Sbjct 1874781 GCCCTTCCTGTAGGGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTT 1874722
Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769
|| || || |||||| | | ||||| |||| ||| |||||| || ||
Sbjct 1874721 GTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCC 1874662
Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
|| || || ||| ||| || || | |||| ||||||||||| || |||||||| ||
Sbjct 1874661 TTCGACTTCATGGACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1874603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262313154080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |