Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq5 102 8e-17 seq1 98.7 1e-15 seq3 89.7 5e-13 >seq6 Length=2137015 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | ||| || ||||||||||| || || | Sbjct 301254 GACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCG 301195 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||| || || ||||| || ||||| ||| | |||| || | Sbjct 301194 AAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTTGCCTTCAC 301136 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||||| ||| | ||| || |||||||| || | Sbjct 301135 GTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCT 301077 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 301076 TGACGAAGATCTGCATGCCT 301057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138409 AAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGT 138468 ||||| | | | |||||||| |||||||| ||||| | || || ||||||||| Sbjct 300756 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGC 300697 Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 || || || | |||| | ||||| ||||| || || || || || ||||| ||| Sbjct 300696 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 300637 Query 138529 TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 || || | | || | ||||| | ||||||||||||| ||| | ||| || ||| Sbjct 300636 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 300577 Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || || || || ||||||||| || Sbjct 300576 GTCAACGTCTTCACGAAGATCTGCATGCCT 300547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 138396 CAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACG 138455 |||||||| | | ||| | | | |||||||| || ||||| ||||| | || || Sbjct 300480 CAAACGCAC--CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCG 300423 Query 138456 CGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC 138515 ||||||||| || || || | |||| | |||||| ||||| || || || || || Sbjct 300422 GCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTC 300363 Query 138516 TTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCG 138574 ||||| ||| | || | || | | || | ||||| | ||||||||||||| | Sbjct 300362 CTTGTCC-TGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGG 300304 Query 138575 TCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATA 138625 | | ||| || ||||| || || || || || ||||||||| | ||||||| Sbjct 300303 TGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTC-TATAATA 300254 >seq5 Length=2295515 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154283 CAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGC 154342 || ||||||||| | || ||| ||| || | || ||||| ||||| || || || Sbjct 536759 CAGGAAACACGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGC 536700 Query 154343 GTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402 ||| || || || | ||||| | ||| ||||| || ||| |||| |||| | Sbjct 536699 GTGAGTGAAGTAACGTTCGGACATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGC 536640 Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || |||||||||| ||||||||| |||||||| ||||| Sbjct 536639 GCCGTGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGAC 536586 >seq1 Length=3403828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || || | | Sbjct 2304905 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2304846 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || |||||||| ||||| || || || || || || ||| || ||| | Sbjct 2304845 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2304786 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||| | || | || || |||||||| ||||| Sbjct 2304785 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2304726 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2304725 ACAAAGATCTGCAT 2304712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||| ||||| ||| | ||| ||| ||||| | || || || | Sbjct 2304620 GACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCG 2304561 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | || || ||||| ||||| || ||||| ||||| ||| | || | || | Sbjct 2304560 AAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCAC 2304502 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||||| ||||||| || | ||| || || |||| ||| | Sbjct 2304501 GTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCT 2304443 Query 138599 TTACAAAAATCTGCATG 138615 |||| |||||||||||| Sbjct 2304442 TTACGAAAATCTGCATG 2304426 >seq3 Length=3048375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || || | |||| | |||||||| || || ||||||| |||||||||||||| Sbjct 1874781 GCCCTTCCTGTAGGGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTT 1874722 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || || || |||||| | | ||||| |||| ||| |||||| || || Sbjct 1874721 GTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCC 1874662 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || || ||| ||| || || | |||| ||||||||||| || |||||||| || Sbjct 1874661 TTCGACTTCATGGACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1874603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262313154080