Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 3e-28
seq6 98.7 9e-16
>seq1
Length=3403828
Score = 140 bits (154), Expect = 3e-28
Identities = 152/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||||||||| ||||||||||||||| | || || ||| || | ||| ||||||
Sbjct 2304623 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2304564
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| || ||||| |||||||| || || ||||||||| || ||| |||
Sbjct 2304563 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2304504
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| | | ||||||| | |||||| |||| || | ||| || || |||| |||
Sbjct 2304503 ACGTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGT 2304445
Query 127096 TTTTACAAAAATCTGCATG 127114
||||| ||||||||||||
Sbjct 2304444 CTTTACGAAAATCTGCATG 2304426
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || |||||||||||| | |||||| ||| || |||||||| |||
Sbjct 2304341 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2304282
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| |||||||| || |||||||||||| || ||| ||||
Sbjct 2304281 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2304222
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| | ||| ||||| | || | || ||||| |||| ||
Sbjct 2304221 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2304162
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 2304161 TTGACGAAGATCTGCATG 2304144
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| ||| | || || ||| || ||||| || ||
Sbjct 2304909 CGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCC 2304850
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|| | || | ||||| ||||| || || ||||||||||| ||| ||| ||| ||
Sbjct 2304849 CGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTT 2304790
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
|| | |||| ||||| | |||||| || | ||| | || ||||| ||||| ||
Sbjct 2304789 GACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 2304730
Query 127096 TTTTACAAAAATCTGCAT 127113
||| ||||| ||||||||
Sbjct 2304729 TTTCACAAAGATCTGCAT 2304712
>seq6
Length=2137015
Score = 98.7 bits (108), Expect = 9e-16
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || ||| ||||||| |||||||| ||||| || || |||||||||
Sbjct 300418 TCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTG 300359
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| || ||| ||| | | |||| ||||||| | ||| || |||| ||| | |
Sbjct 300358 TCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATC 300299
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
|| || || || || || || || || ||||||||| ||
Sbjct 300298 GTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTCT 300260
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 126906 CCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTA 126965
||||||| | || ||||| || ||||| || || || | ||||| || || |
Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699
Query 126966 GCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGA 127025
|||| || || ||| ||||||| |||||||| || || || ||||||||||||||| ||
Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639
Query 127026 TTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGC 127085
| || ||||| | |||| ||||| | ||| || |||| || | ||| || |
Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579
Query 127086 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
| |||| || || || || ||||||||| ||
Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 300547
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| || || ||| | ||||| || || ||||| || ||
Sbjct 301029 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 300970
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || ||||||||||| || || ||| |||
Sbjct 300969 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300910
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | | |||||| |||| || | ||| ||||| || || ||
Sbjct 300909 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300850
Query 127097 TTTACAAAAATCTGCAT 127113
|| || ||||| |||||
Sbjct 300849 TTGACGAAAATTTGCAT 300833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || |||||||| || | ||||| ||| || || || || |||
Sbjct 301257 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 301198
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035
||| | || | |||||||| || || || || |||||||||||| ||| | | || |||
Sbjct 301197 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTT 301139
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| |||| |||| ||||| | |||||| |||| || | ||| ||||| ||||| |
Sbjct 301138 CACGTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGG 301080
Query 127095 TTTTTACAAAAATCTGCATGGCT 127117
| || || || ||||||||| ||
Sbjct 301079 TCTTGACGAAGATCTGCATGCCT 301057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500716787360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |