Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 219 4e-52 seq1 122 9e-23 seq6 109 5e-19 >seq3 Length=3048375 Score = 219 bits (242), Expect = 4e-52 Identities = 389/562 (69%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| |||||| || |||||| ||||| |||||||| | |||||||| ||| Sbjct 1874921 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1874980 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | || ||||||||||| || || || | ||| || || | ||||||| | Sbjct 1874981 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1875040 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | |||||| || || ||||| || || | ||||| | || |||| Sbjct 1875041 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAG- 1875099 Query 133064 CTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | | || ||||||||| || ||||| || ||||| |||||| || || || || Sbjct 1875100 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTC 1875159 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 || | || | || || | | | | | | ||| | | ||| || ||||| | Sbjct 1875160 TCAACAGCATCGAA--AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAA 1875217 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | || || | || ||| | || ||||| ||||| || ||||| ||||| | Sbjct 1875218 GAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAAC 1875277 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 ||||||| || |||| || || | | ||| ||||| || || || ||||||||||||| Sbjct 1875278 GCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGC 1875337 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || |||||| ||||| || || || ||| || || || ||||| |||||||| | Sbjct 1875338 CATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAA 1875397 Query 133361 AGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 ||| | ||||||| | || || |||||||||| ||| ||| | ||||| || | Sbjct 1875398 GGCGGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAG 1875457 Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439 |||| || |||||||||||||| Sbjct 1875458 ACGCTTCAGCTTTTTTGTACAT 1875479 Score = 219 bits (242), Expect = 4e-52 Identities = 389/563 (69%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | || ||||| || |||| || ||||||| ||| |||||||| Sbjct 1877274 TGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAG 1877215 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || || || || |||||||| || ||||| || ||||| || || | || ||| | Sbjct 1877214 AAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATC 1877155 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| || || || |||||||| ||||||| | | | | ||||| | Sbjct 1877154 CGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACC 1877095 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | | |||||| | || ||||| |||| ||| | |||||||| || || || | Sbjct 1877094 GTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1877035 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAG 133181 |||| | || || | | || | || | ||| | | | |||||| |||||||| Sbjct 1877034 CGATCGAATTGAAGAG--GAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAG 1876977 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 | || || |||||||||| | ||| ||||| ||||||||| || ||||| || || Sbjct 1876976 GAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCG 1876917 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGACCAGATTTTCGTTGACGATG 133299 | || | | || ||||| | ||||| ||||| |||||||| |||||||| || Sbjct 1876916 GACTTCAGCGGCTTGTACTTC--GCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATA 1876859 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 |||||| ||||| ||||| ||||| || | ||||||||||| ||||| || ||| Sbjct 1876858 CCGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTC 1876799 Query 133360 AAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 | | || ||||||| | || ||||||| || | ||| ||| ||||||||| Sbjct 1876798 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1876739 Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439 || |||| |||||| |||||||| Sbjct 1876738 GAAGCCTGGGCTTTCTTGTACAT 1876716 >seq1 Length=3403828 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || |||||| | || Sbjct 2304712 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2304771 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||| || || | || ||| Sbjct 2304772 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2304831 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2304832 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2304891 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||| || | || || ||| | | ||||| Sbjct 2304892 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2304938 >seq6 Length=2137015 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| || || || |||| |||||| | | Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| |||||| | ||||| Sbjct 300893 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300951 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || |||| ||||| || |||||| || Sbjct 300952 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301011 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || ||||| | || || ||| Sbjct 301012 CATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGT 301048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172712469760