Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 219 4e-52
seq1 122 9e-23
seq6 109 5e-19
>seq3
Length=3048375
Score = 219 bits (242), Expect = 4e-52
Identities = 389/562 (69%), Gaps = 9/562 (2%)
Strand=Plus/Plus
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
|||||| |||||| || |||||| ||||| |||||||| | |||||||| |||
Sbjct 1874921 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1874980
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
||| || | || ||||||||||| || || || | ||| || || | ||||||| |
Sbjct 1874981 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1875040
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063
| || ||||| | |||||| || || ||||| || || | ||||| | || ||||
Sbjct 1875041 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAG- 1875099
Query 133064 CTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122
| | | || ||||||||| || ||||| || ||||| |||||| || || || ||
Sbjct 1875100 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTC 1875159
Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180
|| | || | || || | | | | | | ||| | | ||| || ||||| |
Sbjct 1875160 TCAACAGCATCGAA--AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAA 1875217
Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240
| || || | || ||| | || ||||| ||||| || ||||| ||||| |
Sbjct 1875218 GAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAAC 1875277
Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300
||||||| || |||| || || | | ||| ||||| || || || |||||||||||||
Sbjct 1875278 GCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGC 1875337
Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360
| || |||||| ||||| || || || ||| || || || ||||| |||||||| |
Sbjct 1875338 CATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAA 1875397
Query 133361 AGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417
||| | ||||||| | || || |||||||||| ||| ||| | ||||| || |
Sbjct 1875398 GGCGGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAG 1875457
Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439
|||| || ||||||||||||||
Sbjct 1875458 ACGCTTCAGCTTTTTTGTACAT 1875479
Score = 219 bits (242), Expect = 4e-52
Identities = 389/563 (69%), Gaps = 11/563 (2%)
Strand=Plus/Minus
Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943
|||||| | || ||||| || |||| || ||||||| ||| ||||||||
Sbjct 1877274 TGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAG 1877215
Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003
|| || || || |||||||| || ||||| || ||||| || || | || ||| |
Sbjct 1877214 AAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATC 1877155
Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063
| || ||||||| || || || |||||||| ||||||| | | | | ||||| |
Sbjct 1877154 CGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACC 1877095
Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123
|| | | |||||| | || ||||| |||| ||| | |||||||| || || || |
Sbjct 1877094 GTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1877035
Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAG 133181
|||| | || || | | || | || | ||| | | | |||||| ||||||||
Sbjct 1877034 CGATCGAATTGAAGAG--GAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAG 1876977
Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241
| || || |||||||||| | ||| ||||| ||||||||| || ||||| || ||
Sbjct 1876976 GAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCG 1876917
Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGACCAGATTTTCGTTGACGATG 133299
| || | | || ||||| | ||||| ||||| |||||||| |||||||| ||
Sbjct 1876916 GACTTCAGCGGCTTGTACTTC--GCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATA 1876859
Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359
|||||| ||||| ||||| ||||| || | ||||||||||| ||||| || |||
Sbjct 1876858 CCGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTC 1876799
Query 133360 AAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416
| | || ||||||| | || ||||||| || | ||| ||| |||||||||
Sbjct 1876798 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1876739
Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439
|| |||| |||||| ||||||||
Sbjct 1876738 GAAGCCTGGGCTTTCTTGTACAT 1876716
>seq1
Length=3403828
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| || || ||||| ||||||||| | || |||||| | ||
Sbjct 2304712 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2304771
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || |||| || || ||||| || || | || |||
Sbjct 2304772 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2304831
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| |||||||| ||||| || || | || ||||| ||||||||||
Sbjct 2304832 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2304891
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| ||||||| || | || || ||| | | |||||
Sbjct 2304892 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2304938
>seq6
Length=2137015
Score = 109 bits (120), Expect = 5e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||||||||| || || || |||| |||||| | |
Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | || || ||||| |||||| | |||||
Sbjct 300893 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300951
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||||||||| ||||| || |||| ||||| || |||||| ||
Sbjct 300952 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301011
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| | || ||||| | || || |||
Sbjct 301012 CATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGT 301048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172712469760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |