Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2 199 5e-46
>seq2
Length=3087500
Score = 199 bits (220), Expect = 5e-46
Identities = 256/353 (73%), Gaps = 0/353 (0%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || || ||||| || ||||||||
Sbjct 1769916 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCAGTGGCCTTGACCTCGAAGATACCC 1769857
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | | || ||||| || || || || || || || || ||||| |||
Sbjct 1769856 TCCTCGATGGTAAGAAGAGACACATCGAAAGTTCCTCCTCCGAGATCGAAGATGAGGACG 1769797
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| || ||||| |||||||| ||||| ||||| || || || || ||
Sbjct 1769796 TTGCGCTCGCCGATCACCTTCTTGTCGAGACCATACGCAATAGCGGCGGCGGTGGGCTCG 1769737
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| ||||||||||| ||||| || | || ||| | || || || || || || ||
Sbjct 1769736 TTGATAATACGAAGGATGTTCATTCCGGAGATGGTTCCGGCGTCCTTGGTAGCCTGACGC 1769677
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
||||| ||||| ||||| || || ||||| ||||| |||| |||||| || | |||||
Sbjct 1769676 TGCGAGTCGTTGAAGTACGCAGGCACCGTCACGACGGCGTTCGTGACGGTCGTGCCGAGG 1769617
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| || || ||| | || ||||| || ||||||||||| || ||||||||
Sbjct 1769616 TAAGACTCAGCGGTCTCCTTCATCTTCAAGAGAACCATCGAGGAGATCTCTTC 1769564
Score = 140 bits (154), Expect = 4e-28
Identities = 193/268 (72%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || ||||| || ||||| | |||| |||
Sbjct 888423 TCGAAGTCCTCACCACCCAAGTGGGTGTCGCCGGCGGTGGCCTTGACGGCGAAGACACCG 888482
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||||| | | ||| ||||| || || || ||||| || || || ||||| |||
Sbjct 888483 CCGCTGATGTTGAGGAGCGAGACATCGAAAGTTCCTCCACCGAGATCGAAGATGAGGACG 888542
Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| ||| ||||| | | || ||||||||||| ||||| || || || || || |
Sbjct 888543 TTGCGCTCG--GTCTTCGATTGCTGGTCGAGACCGTATGCGATGGCGGCGGCGGTGGGCT 888600
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || || ||||| || || |||||||| || | | || || || ||||| | |
Sbjct 888601 CGTTGATGATACGGAGCACGTCGAGGCCAGCGATGGCGCCGGCGTCCTTGGTCGCGAGAC 888660
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
| ||||| ||||| |||||||| |||||
Sbjct 888661 GCTGCGAGTCGTTGAAGTAGGCAGGGAC 888688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132688851760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |