Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 100 4e-16 >seq3 Length=3048375 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1875092 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1875033 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1875032 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1874973 Query 102294 CTTATCTCTCGTGACGAGGGA 102314 || ||| ||||||||||||| Sbjct 1874972 CTCATCAGTCGTGACGAGGGA 1874952 >seq5 Length=2295515 Score = 100 bits (110), Expect = 4e-16 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || | |||||| |||| ||||| |||| || |||| || || Sbjct 539192 GGTACCAATGGATACTCCAACGGTATTGTTCCCATGCTCCGCGCATACGACGCGACTGCT 539251 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 |||||||| | |||| || ||| ||| || | ||| |||||||||||||| Sbjct 539252 CGCTATGTCGATCAAGGCGGTAACAAGCGCCCGGGTGCTTTTGCAATCTATCTTGAGCCA 539311 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||| |||||| || ||| | || | ||| || || || | ||||| | Sbjct 539312 TGGCACGCCGATATCTACGAATTCATCGACCTCCGTAAAAATCACGGCAAGGAGGAAG-T 539370 Query 112080 CGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | |||| ||||| ||||||| || |||||||| || ||||| || Sbjct 539371 CCGTGCACGCGACCTCTTCTATGCGCTCTGGATCCCCGATCTTTT 539415 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/229 (69%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || |||||||| |||| ||||| |||| | ||| || || Sbjct 537278 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACGACGAGACTGCT 537337 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAA------GGGATCTATCGCAGTCTATCTTGAG 112016 |||||||| | |||| || | ||| ||| || ||||| ||||| ||||| Sbjct 537338 CGCTATGTCGATCAAGGCGG---TAACAAACTCCTGGGCGCTTTCGCAATCTATATTGAG 537394 Query 112017 CCATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||| || |||| ||| |||||| | || | ||| ||||| || | ||||| Sbjct 537395 CCATGGCATGCCGATA-CATATGAGTTCGTCGACCTCCGTAAAAACCACGGCAAGGAGGA 537453 Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | |||| ||||| ||||||| || || ||||| || ||||| || Sbjct 537454 AG-TTTGTGCACGCGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 537501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742291370080