Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1 187 6e-42
seq6 140 7e-28
>seq1
Length=3403828
Score = 187 bits (206), Expect = 6e-42
Identities = 166/208 (80%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992
||||||| | ||| |||||||| |||||||||||||||| ||||||| |||||| || |
Sbjct 2304634 CAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2304575
Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052
|||||| || |||||||| | ||||| ||||| |||||||| ||||| ||||| ||||
Sbjct 2304574 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2304515
Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112
| || ||| ||||| ||||| ||||||||| || || || || || | |||||| |
Sbjct 2304514 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2304455
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| |||||||| | |||||
Sbjct 2304454 CCGTCAAAGTCTTTACGAAAATCTGCAT 2304427
Score = 172 bits (190), Expect = 1e-37
Identities = 163/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992
|||||||||| || ||||| || || ||||||||||||| ||| || | |||||| || |
Sbjct 2304352 CAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAA 2304293
Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052
|||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| ||||
Sbjct 2304292 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2304233
Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112
| || |||||| || || || ||||||||| ||||||||||| || | ||||| |
Sbjct 2304232 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2304173
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || ||||| | |||||
Sbjct 2304172 CCGTCAATGTCTTGACGAAGATCTGCAT 2304145
Score = 116 bits (128), Expect = 8e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || || || ||||| |||| ||| || | ||||| |||
Sbjct 2304920 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCG 2304861
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || ||||| || ||||| || || || ||||| || || || ||
Sbjct 2304860 AGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGG 2304801
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||| || || || ||||| || || || || | ||| | |||||
Sbjct 2304800 ATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTG 2304741
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||||| || || | |||||
Sbjct 2304740 CCAGTCAGGGTTTTCACAAAGATCTGCAT 2304712
Score = 111 bits (122), Expect = 3e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994
|| || || ||| |||||| ||||| |||||||| | ||| || | || || || |
Sbjct 2305145 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2305086
Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054
||||| || || || || || ||||| ||||| || || |||||||| |||||||||||
Sbjct 2305085 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2305026
Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114
|| ||| || || || || ||||||||| || || || | || | ||||| |||
Sbjct 2305025 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2304966
Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140
|| | || || ||||| | |||||
Sbjct 2304965 GTGAGGGTCTTGACGAAGATCTGCAT 2304940
Score = 84.2 bits (92), Expect = 5e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||| | ||| || || |||||||| || || || || || ||||| || | | || |
Sbjct 2304135 GAGGCGCAAGACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTACG 2304076
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037
||||| |||||||| || || ||||| || || ||||||||||| ||||||||||
Sbjct 2304075 GCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAATGC 2304020
>seq6
Length=2137015
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|||||||| || ||||| || || |||| |||||| | || |||||||||||||| ||
Sbjct 301029 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 300970
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|||||||| | || || ||||| || |||||||| || || |||||||| || |||
Sbjct 300969 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300910
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
||||| || || ||||| ||| || || || || |||| |||||| || || | ||
Sbjct 300909 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300850
Query 195124 TTTACGAACACTTGCAT 195140
|| ||||| | ||||||
Sbjct 300849 TTGACGAAAATTTGCAT 300833
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992
|||||||||| ||| ||| || || |||||||| || | || || | || || ||||
Sbjct 301544 CAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGA 301485
Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052
||||||| || ||||| || || || || ||||| |||||||| ||||| ||||| ||||
Sbjct 301484 GCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 301425
Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112
| || |||||| || || || ||||||||| || || || || || | ||||| |
Sbjct 301424 TCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTAC 301365
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATT 195141
| || | || || || || | ||||||
Sbjct 301364 CCGTGAGGGTCTTGACAAAGATCTGCATT 301336
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || ||||| || || || | ||| || | || || |||||||||
Sbjct 300753 TGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGC 300694
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| | || || ||||| || || ||||| || ||||| || || ||
Sbjct 300693 TTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 300634
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||||||| || || ||||| || ||||| || || || | ||||||||| |||
Sbjct 300633 GCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTC 300574
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 300573 AACGTCTTCACGAAGATCTGCAT 300551
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994
|| ||||| || ||||| || || || || || || | ||| || | || || ||||||
Sbjct 300469 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300410
Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054
||||| || |||||||| | || || ||||| || || || || || ||||| |||||
Sbjct 300409 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATC 300350
Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114
|| ||| ||||| || || ||||||||| ||||| || ||||| | |||||| ||
Sbjct 300349 TTCGCCTTCACGTTATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300290
Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140
|| | || || ||||| | |||||
Sbjct 300289 GTGAGGGTCTTCACGAAGATCTGCAT 300264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481400986738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |