Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq1 105 4e-18 >seq6 Length=2137015 Score = 107 bits (118), Expect = 1e-18 Identities = 162/226 (72%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 34764 AACCTCAAA---ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCT 34819 ||||||||| ||| || |||| || || ||||| |||||||||||||||||| | Sbjct 300485 AACCTCAAACGCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 300426 Query 34820 TCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCC 34879 || | || || ||||| || || || || || | || |||||||| | || | || Sbjct 300425 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCC 300366 Query 34880 CTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACAT 34935 ||||||||| ||||||| || ||| ||||||| | ||| | ||| || | Sbjct 300365 CTCCTTGTCCTGAATCTTCGCCTTCACGT----TATCGATCGTGTCCGAAGACTCCACCT 300310 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||| || || || || ||||| |||||||| ||||||||||| Sbjct 300309 CGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300264 Score = 102 bits (112), Expect = 5e-17 Identities = 154/214 (72%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| ||||| || ||||| || || ||||| || ||| | || | || || Sbjct 301546 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 301487 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | ||| |||||||| Sbjct 301486 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 301427 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | ||||| | ||| | ||| || || | || || | Sbjct 301426 AATCTTCGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTG 301371 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||| |||||||||||||| Sbjct 301370 TCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301337 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| |||||| | || | || || ||||| || || || || Sbjct 300741 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300682 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 300681 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 300622 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || ||||| || | |||||||| Sbjct 300621 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 300562 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 300561 AAGATCTGCAT 300551 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||||||||| | ||| |||| || || || || || || || Sbjct 301251 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAAA 301192 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 301191 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 301132 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || || || || || ||||| || Sbjct 301131 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACG 301072 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 301071 AAGATCTGCAT 301061 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| ||||| | || | || || ||||| || || || || Sbjct 301023 TCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 300964 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | |||||||| || ||||||| || ||| Sbjct 300963 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 300904 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||| | ||| || |||| || || || || |||||||| ||||| || Sbjct 300903 TCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACG 300844 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 300843 AAAATTTGCATA 300832 >seq1 Length=3403828 Score = 105 bits (116), Expect = 4e-18 Identities = 147/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| |||||||||||||| || |||||||| | || | || |||| || || || Sbjct 2305136 GTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCC 2305077 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| |||| | || |||||||| ||||||| || Sbjct 2305076 GCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTC 2305017 Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || ||||||| | ||| | ||| || || | || || || || || ||||| Sbjct 2305016 AC--AT--TATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAG 2304961 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||||||| Sbjct 2304960 GGTCTTGACGAAGATCTGCATA 2304939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 2304902 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2304843 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | |||||||| || |||||| |||||| || Sbjct 2304842 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGAC--AT 2304785 Query 34911 GCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||||||| ||| | || || || | ||| ||||| || || || || || || Sbjct 2304784 --TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 2304727 Query 34967 CACAAAGATCTGCATA 34982 |||||||||||||||| Sbjct 2304726 CACAAAGATCTGCATA 2304711 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || || || || || |||| |||| |||| ||| ||||| || || Sbjct 2304617 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2304558 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||| |||||||| ||||||| || ||| Sbjct 2304557 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2304498 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| || || || || ||||| | |||||| || Sbjct 2304497 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2304438 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2304437 AAAATCTGCAT 2304427 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || || || ||||| | || |||| || |||||||| || || || Sbjct 2304335 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2304276 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| ||||| || Sbjct 2304275 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT 2304218 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | || ||||| || ||||| | ||||| Sbjct 2304217 --TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTT 2304160 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 2304159 GACGAAGATCTGCAT 2304145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633544609392