Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=3048375 Score = 187 bits (206), Expect = 3e-42 Identities = 392/579 (68%), Gaps = 9/579 (2%) Strand=Plus/Minus Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 |||||| | |||| | ||| |||||||| || | || ||||| | ||| |||| Sbjct 1877282 AAGATGACTGAACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAG 1877223 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| |||||||| |||||||||||||| || |||| ||| || | |||||| || ||||| Sbjct 1877222 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1877163 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 ||| ||||| || ||||| || |||||||| || || || || || | || || | Sbjct 1877162 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-A 1877104 Query 19122 ACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATG 19180 || | | || | || ||||| | || ||||| || | ||||| || || |||| Sbjct 1877103 ACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATG 1877044 Query 19181 GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCAT 19240 | || ||||| || ||||| || || | ||||| | | || | || | || Sbjct 1877043 GTATAGTCTCGATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTAT 1876984 Query 19241 CTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAA 19300 | || | | | ||| |||| || ||||| ||||| || || |||||||| |||| Sbjct 1876983 CGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAA 1876924 Query 19301 AACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAA 19360 |||| | |||| | |||||||| || |||| | || |||| ||| || || | Sbjct 1876923 AACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGA 1876864 Query 19361 CTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCAT 19417 | || || || ||| |||||||| || | |||| | || |||| ||| | || Sbjct 1876863 CAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTAT 1876804 Query 19418 C--TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 | | |||||| | ||||| || |||||||| || | ||| | ||||| || Sbjct 1876803 CATTCAGGTTATCG--TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGT 1876746 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 |||||| ||||||| ||||| || ||||| | ||| || Sbjct 1876745 CCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1876707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108701630960