Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 208 1e-48 >seq3 Length=3048375 Score = 208 bits (230), Expect = 1e-48 Identities = 380/555 (68%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| ||| || ||||| | |||| || ||||| || |||||||| | ||||||||| Sbjct 1874926 AGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAG 1874985 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||| |||||||||| || | || || | |||||| |||| |||||||| || ||| Sbjct 1874986 GTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAG 1875045 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 ||||| ||||||||||| || ||||| ||| | | ||| | || | | | Sbjct 1875046 AAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGA 1875105 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || ||||||||| || |||||||| |||||| | |||| || || || ||||| | Sbjct 1875106 TCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCAACA 1875165 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 || ||| || | || || | | |||| | || ||| || || | | Sbjct 1875166 GCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAG 1875225 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || |||| ||| | ||| || || || ||||||||||||||| | |||||| Sbjct 1875226 TAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCCTCA 1875285 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | |||| || || | ||||| | ||| | || ||||| ||||| || ||||| || Sbjct 1875286 GCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAG 1875345 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---- 48600 || ||||| || || |||||||| | || || ||||| |||| | | || || Sbjct 1875346 GCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAG-GCGGTT 1875404 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 ||||||| | || | ||||| |||||||| ||||| |||||||||| ||||| Sbjct 1875405 ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGCTTC 1875464 Query 48661 TGCTTTTTTGTACAT 48675 |||||||||||||| Sbjct 1875465 AGCTTTTTTGTACAT 1875479 Score = 150 bits (166), Expect = 3e-31 Identities = 369/556 (66%), Gaps = 19/556 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||| || |||||| ||||||||||| || || || |||| || ||| | | Sbjct 1877263 CAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1877204 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || |||||||| |||| || ||||| || ||||||||| Sbjct 1877203 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1877144 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG--AAGCGTTCTTGTCTG 48308 || || || || ||||||||||| | |||| | || | | ||| | ||| | Sbjct 1877143 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT--TGGTCAG 1877086 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || ||||| || | ||||| ||||| |||||| || ||||| || | Sbjct 1877085 AGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAAT 1877026 Query 48369 GGAAGAGCTTCTTGCACTCAC-CTGC-----GTCCGCAACATAGGTAGTGAGCAGCTTTG 48422 |||||| | | ||| |||| ||| | | |||||| || || | Sbjct 1877025 TGAAGAG------GAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAGAG 1876972 Query 48423 CGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCT 48482 ||| | || ||||| | || || || ||| || || || || || | | | | Sbjct 1876971 AGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTT 1876912 Query 48483 CAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTG 48542 || | || ||||| | || || | ||||| ||||||||| ||||| || || || | Sbjct 1876911 CAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGG 1876852 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AG 48599 |||| ||||| || || ||||||| | | ||||||||| ||||| | | || | Sbjct 1876851 AAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTAT 1876792 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 | |||||| | | |||||| || || | ||||| ||||| || || || Sbjct 1876791 CGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCT 1876732 Query 48660 GTGCTTTTTTGTACAT 48675 | ||||| |||||||| Sbjct 1876731 GGGCTTTCTTGTACAT 1876716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532636981760