Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 2e-22
>seq3
Length=3048375
Score = 122 bits (134), Expect = 2e-22
Identities = 371/567 (65%), Gaps = 11/567 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||| || ||| || || |||||| ||||||||||| || |||
Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
| || || | ||| |||| | ||| || | | | | |||| || ||| ||
Sbjct 1875428 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1875370
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
| | || | || || ||||| ||||||||||| || || |||||||| || ||| |
Sbjct 1875369 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1875310
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
||| | | || || ||| | ||||| || |||||||| ||||| || ||
Sbjct 1875309 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1875250
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770
|||||| | ||| ||| || || ||| | ||| || ||||| | |||
Sbjct 1875249 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1875191
Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829
|| | ||| | || || | ||| | ||| ||| || | |||| ||||||||
Sbjct 1875190 AGCAACGCGAGTAC--CTTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGC 1875133
Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889
| ||||| | |||||| | | || | || |||| ||||| | || ||
Sbjct 1875132 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1875073
Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949
||| || |||||||||||||| || ||| |||||| || || | ||||||||| | ||
Sbjct 1875072 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1875013
Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
| || || |||||| || || ||| ||||| || |||||||| | ||||||||
Sbjct 1875012 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1874953
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036
| || | || || || ||| ||||
Sbjct 1874952 AATGCATACCGACTTCGCATGCTTGCT 1874926
Score = 118 bits (130), Expect = 2e-21
Identities = 374/567 (66%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||| || || || ||||| |||||||||| ||| ||
Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGA---CGAGCAGCATTT--TCT 25589
|||| || || || |||| ||| | | || || || ||| | ||||| | |
Sbjct 1876767 TCCAAAGATATCTTCGACTGGAACGAT--AACCTGAATGATAACGAACGCCATTTCATAT 1876824
Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
|| || || |||| || ||||| || || || ||||| || |||||||||||| ||
Sbjct 1876825 CA--TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1876882
Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709
| | || | || ||||| || || || | | ||||| || || || || ||
Sbjct 1876883 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1876942
Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768
|| ||||| | ||||| || || | || | ||| || ||||| | |||
Sbjct 1876943 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATCCCTGAC- 1877000
Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827
|| | | || | | || || | | |||||| ||||| || ||||| ||||
Sbjct 1877001 TCTCAGCAGCGTGGCTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1877060
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
| ||||||| | | ||||||| ||| | | ||||||| | | || ||||
Sbjct 1877061 ACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTG 1877120
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947
|| || || || || || || ||||| ||| ||| || ||||| | |||||||||||
Sbjct 1877121 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1877180
Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006
||| | | | || | |||||| || | |||||| ||||| || || || |||||||
Sbjct 1877181 AAG-AAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGA 1877239
Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCT 26033
|| | |||| |||||||||||| ||
Sbjct 1877240 AGGGATGCACACAGATTTTGCCTGTCT 1877266
Score = 95.1 bits (104), Expect = 2e-14
Identities = 118/160 (74%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209
|||||||| || |||||| |||| ||||| |||| ||| || |||| |||||| |
Sbjct 1874760 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATT 1874701
Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269
||| || || || | | ||||| || | ||||| |||||||| ||||| | |
Sbjct 1874700 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTCATGGACATGA 1874643
Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309
| || ||| | |||||||||||||||||||| ||| ||||
Sbjct 1874642 TCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1874603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844637452160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |