Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 122 2e-22 >seq3 Length=3048375 Score = 122 bits (134), Expect = 2e-22 Identities = 371/567 (65%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| || ||| || || |||||| ||||||||||| || ||| Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | || || | ||| |||| | ||| || | | | | |||| || ||| || Sbjct 1875428 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1875370 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | || | || || ||||| ||||||||||| || || |||||||| || ||| | Sbjct 1875369 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1875310 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1875309 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1875250 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770 |||||| | ||| ||| || || ||| | ||| || ||||| | ||| Sbjct 1875249 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1875191 Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | ||| | || || | ||| | ||| ||| || | |||| |||||||| Sbjct 1875190 AGCAACGCGAGTAC--CTTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAAGGC 1875133 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | ||||| | |||||| | | || | || |||| ||||| | || || Sbjct 1875132 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1875073 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| || |||||||||||||| || ||| |||||| || || | ||||||||| | || Sbjct 1875072 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1875013 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||| ||||| || |||||||| | |||||||| Sbjct 1875012 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1874953 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036 | || | || || || ||| |||| Sbjct 1874952 AATGCATACCGACTTCGCATGCTTGCT 1874926 Score = 118 bits (130), Expect = 2e-21 Identities = 374/567 (66%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||| || || || ||||| |||||||||| ||| || Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGA---CGAGCAGCATTT--TCT 25589 |||| || || || |||| ||| | | || || || ||| | ||||| | | Sbjct 1876767 TCCAAAGATATCTTCGACTGGAACGAT--AACCTGAATGATAACGAACGCCATTTCATAT 1876824 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 || || || |||| || ||||| || || || ||||| || |||||||||||| || Sbjct 1876825 CA--TATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1876882 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | || | || ||||| || || || | | ||||| || || || || || Sbjct 1876883 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1876942 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768 || ||||| | ||||| || || | || | ||| || ||||| | ||| Sbjct 1876943 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATCCCTGAC- 1877000 Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 || | | || | | || || | | |||||| ||||| || ||||| |||| Sbjct 1877001 TCTCAGCAGCGTGGCTTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1877060 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | ||||||| | | ||||||| ||| | | ||||||| | | || |||| Sbjct 1877061 ACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTG 1877120 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || || || || || ||||| ||| ||| || ||||| | ||||||||||| Sbjct 1877121 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1877180 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| | | | || | |||||| || | |||||| ||||| || || || ||||||| Sbjct 1877181 AAG-AAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGA 1877239 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCT 26033 || | |||| |||||||||||| || Sbjct 1877240 AGGGATGCACACAGATTTTGCCTGTCT 1877266 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209 |||||||| || |||||| |||| ||||| |||| ||| || |||| |||||| | Sbjct 1874760 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATT 1874701 Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269 ||| || || || | | ||||| || | ||||| |||||||| ||||| | | Sbjct 1874700 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTCATGGACATGA 1874643 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 | || ||| | |||||||||||||||||||| ||| |||| Sbjct 1874642 TCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1874603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844637452160