Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-25 seq5 87.8 2e-11 >seq3 Length=3048375 Score = 134 bits (148), Expect = 2e-25 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| || ||| ||| ||| || ||||||||||| |||| | |||||| Sbjct 1874585 GCCTTTGAGTAATCCGACACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATC 1874644 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || |||||||||||||||| ||||| | | Sbjct 1874645 ATGTCCATGAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCGAGGGCAATG 1874704 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || |||||||||||||||||||||||||| ||| |||||||| || Sbjct 1874705 AGCAGACGGTCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATC 1874764 Query 868871 AGCGCCACCGGCAG 868884 ||| | || || || Sbjct 1874765 AGCCCTACAGGAAG 1874778 Score = 105 bits (116), Expect = 8e-17 Identities = 201/293 (69%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || ||||| |||||||| | ||| ||| |||| ||| || |||||||||| Sbjct 1874945 TATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGC 1875004 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 | |||||||| | ||| ||||| | | |||| || ||||| || |||||||| || | Sbjct 1875005 CACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAG 1875064 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 |||| ||| ||| | ||||| ||||| ||| | | | || | |||||| | Sbjct 1875065 CGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTA 1875121 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC-GCGAAAGAGGTGG 869410 |||||||| ||||| | | || | || | || || | || ||||| |||| Sbjct 1875122 GTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCAACAGCATCGAAA-AGGTAC 1875180 Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || |||||||||| || || ||||| || || || |||||||| Sbjct 1875181 TCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTC 1875233 Score = 100 bits (110), Expect = 3e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 868685 ACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 868744 || ||||| |||| || ||| || || ||| || ||||||||||| |||| || Sbjct 1877613 ACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTCCCCTGAAGG 1877554 Query 868745 GAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGC 868804 || |||| ||||| | ||| || |||| | ||||||||||| | ||| || Sbjct 1877553 GAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTGTAGTGCTTGGAGTTTCCAAGA 1877494 Query 868805 GACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATG 868864 || | |||||||| || |||||||| || ||||| || | ||| ||| |||| ||||| Sbjct 1877493 GAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGGCATTCATT 1877434 Query 868865 CCGATGAG 868872 |||||||| Sbjct 1877433 CCGATGAG 1877426 >seq5 Length=2295515 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || || || ||||||||||| || ||| |||||||||||||| || || || Sbjct 539402 TCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCGTGATTTTTACGGA 539343 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||||| | ||| || ||||||||||| ||||| || ||| ||||| || ||| Sbjct 539342 GGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATTGCAAAAGCACCCG 539283 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||||| Sbjct 539282 GGCGCTTGTTACCGCC 539267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138051094438