Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3 134 2e-25
seq5 87.8 2e-11
>seq3
Length=3048375
Score = 134 bits (148), Expect = 2e-25
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| | ||| || ||| ||| ||| || ||||||||||| |||| | ||||||
Sbjct 1874585 GCCTTTGAGTAATCCGACACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGCAAAGAGATC 1874644
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
| ||||| | ||| ||||| | || |||||||||||||||| ||||| | |
Sbjct 1874645 ATGTCCATGAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCGAGGGCAATG 1874704
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| || |||||||||||||||||||||||||| ||| |||||||| ||
Sbjct 1874705 AGCAGACGGTCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTCATGCCAATC 1874764
Query 868871 AGCGCCACCGGCAG 868884
||| | || || ||
Sbjct 1874765 AGCCCTACAGGAAG 1874778
Score = 105 bits (116), Expect = 8e-17
Identities = 201/293 (69%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231
||||| || ||||| |||||||| | ||| ||| |||| ||| || ||||||||||
Sbjct 1874945 TATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGC 1875004
Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291
| |||||||| | ||| ||||| | | |||| || ||||| || |||||||| || |
Sbjct 1875005 CACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAG 1875064
Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351
|||| ||| ||| | ||||| ||||| ||| | | | || | |||||| |
Sbjct 1875065 CGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTA 1875121
Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC-GCGAAAGAGGTGG 869410
|||||||| ||||| | | || | || | || || | || ||||| ||||
Sbjct 1875122 GTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCAACAGCATCGAAA-AGGTAC 1875180
Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
|| || |||||||||| || || ||||| || || || ||||||||
Sbjct 1875181 TCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTC 1875233
Score = 100 bits (110), Expect = 3e-15
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 868685 ACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 868744
|| ||||| |||| || ||| || || ||| || ||||||||||| |||| ||
Sbjct 1877613 ACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTCCCCTGAAGG 1877554
Query 868745 GAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGC 868804
|| |||| ||||| | ||| || |||| | ||||||||||| | ||| ||
Sbjct 1877553 GAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTGTAGTGCTTGGAGTTTCCAAGA 1877494
Query 868805 GACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATG 868864
|| | |||||||| || |||||||| || ||||| || | ||| ||| |||| |||||
Sbjct 1877493 GAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGGCATTCATT 1877434
Query 868865 CCGATGAG 868872
||||||||
Sbjct 1877433 CCGATGAG 1877426
>seq5
Length=2295515
Score = 87.8 bits (96), Expect = 2e-11
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
|||| || || || ||||||||||| || ||| |||||||||||||| || || ||
Sbjct 539402 TCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCGTGATTTTTACGGA 539343
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
|||||| | ||| || ||||||||||| ||||| || ||| ||||| || |||
Sbjct 539342 GGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATTGCAAAAGCACCCG 539283
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||| |||||
Sbjct 539282 GGCGCTTGTTACCGCC 539267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107138051094438
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |