Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 114 2e-19
seq3 113 7e-19
>seq7
Length=1608521
Score = 114 bits (126), Expect = 2e-19
Identities = 237/345 (69%), Gaps = 11/345 (3%)
Strand=Plus/Minus
Query 2175024 AAGGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGA--GCGCCGTTGCCACGCTGCCGT 2175081
|||| ||| || | | || | ||||| ||| |||| ||| || | ||||||||||
Sbjct 925237 AAGGCGTGCGGATTTGAGGACGAGCGCATGGCGTCGACGGCGACGGAG--ACGCTGCCGT 925180
Query 2175082 CGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCT 2175141
|||| || ||||| ||||||| || || | | |||| || | ||||||||| | ||
Sbjct 925179 CGGTCCCATTTTTGAACCCGATGGGGAAGGAGACACCCGAGGCGAGTTCGCGGTGGAGCT 925120
Query 2175142 GGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCG 2175201
| |||||||||||||||||| | ||||||||| | || ||| || || | || |||
Sbjct 925119 GAGACTCGGTGGTGCGCGCGCCGATGGCGCCCCAGGACATGAGATCGGCGATGTACTGCG 925060
Query 2175202 CCACCAAAGGGCTGAGAAACTCGACAGCC-ACGGGCTGGCCGACGTCGACGACCAGGTCG 2175260
| | | || | |||| |||| || || ||||| |||| | ||||||
Sbjct 925059 GCGAGATGGTATCAAGCAGCTCG-GAGCCGACTGGGACGCCGAGGTCGGTG---AGGTCG 925004
Query 2175261 CGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTC 2175319
| || || | || | | |||| ||||| | | || | || ||||||| |||
Sbjct 925003 CAGAGGAGCTGGCG-GGCGAGGCGCAGGCCCTTGTTGATCTGGAAAGAGCCGTCGATGTC 924945
Query 2175320 GGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTT 2175364
||| ||| || ||||| ||||| ||||||||||||||||| ||
Sbjct 924944 GGGATCGTTGATGAGGCCTTTCCAGCCGACGGTCGTGCGCGGTTT 924900
>seq3
Length=3048375
Score = 113 bits (124), Expect = 7e-19
Identities = 223/327 (68%), Gaps = 5/327 (2%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| |||||||| | ||| ||| ||| ||| || ||||||||||| ||||||
Sbjct 1874953 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1875012
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| | ||| ||||| | |||| || ||||| || |||||||| || ||||| |||
Sbjct 1875013 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1875072
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
|||| | ||||| ||||| ||| | | || | |||||| | |||||
Sbjct 1875073 GCGACTAATCGCTCAGCAAATGTGGAGCGACGATC---GGAGATCCAGCGTAGTGCCCAG 1875129
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC-GCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| | | || | || | || || | || ||||| |||| || |
Sbjct 1875130 TCCGCCTTCCTTTTGACACAAGGAATGGTCTCAACAGCATCGAAA-AGGTACTCGCGTTG 1875188
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
|||||||||| ||| || ||||| || || ||||||||||| |||||| |||||
Sbjct 1875189 CTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTTC 1875248
Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666
|| || ||||| || || |||||
Sbjct 1875249 CATCATAATTTGGAACCCGTAGAAGCA 1875275
Score = 109 bits (120), Expect = 9e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 793890 GTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCG 793949
|||||||| ||||| | || || ||| ||| ||| || ||||||||||| ||||
Sbjct 1874576 GTGACGCCGGCCTTTGAGTAATCCGACACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTGC 1874635
Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009
| ||||||| ||||| | ||| ||||| | || ||||||||| |||| |||
Sbjct 1874636 AAAGAGATCATGTCCATGAAGTCGAAGGGGTTTGTCGCGTTGTAGTGCTTTTCGCCACCG 1874695
Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
|| | ||||| ||||| || || || || ||||||||||||||||| ||| |||
Sbjct 1874696 AGGGCAATGAGCAGACGGTCTGCAACAAACTCGATGTACTGGCACATGAGCTTGGCATTC 1874755
Query 794070 ATGCCGATGAGCGCCACGGGCAG 794092
||||| || ||| | || || ||
Sbjct 1874756 ATGCCAATCAGCCCTACAGGAAG 1874778
Score = 96.9 bits (106), Expect = 5e-14
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 793885 TCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGC 793944
|||||| || ||| |||| ||| ||| || || ||| || ||||||||||| |
Sbjct 1877621 TCGATGCTACATGCGCTTTGGAATAATCGGAGACCCGTTTCTCAAAGAAGTTGGTCTTCC 1877562
Query 793945 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC 794004
||| || || |||| ||||| | ||| || |||| | ||||||||| |
Sbjct 1877561 CCTGAAGGGAAATCATTTCCATGAATTCGAATGGATTGGTGGAATTGTAGTGCTTGGAGT 1877502
Query 794005 ACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064
|| || || |||||||||| || ||||| ||||| ||||| || | ||| |||||||
Sbjct 1877501 TTCCAAGAGAGACAAGCAGGCGATCAGCGACAAATTCTATGTATTGACGCATCAGGGCGG 1877442
Query 794065 CGTTCATGCCGATGAG 794080
| ||||| ||||||||
Sbjct 1877441 CATTCATTCCGATGAG 1877426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916244910756146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |