Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 4e-25
seq6 87.8 1e-12
>seq1
Length=3403828
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601
||| ||| || ||||||||||| || ||||||||||| || |||||||| |||| ||||
Sbjct 2305147 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2305088
Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661
|||| || || |||||||||| || ||||| || |||| | ||||| ||||| ||
Sbjct 2305087 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2305028
Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720
| ||| |||| ||| || | ||||| || || || || | |||||| || ||
Sbjct 2305027 TCTTCGCCTTCA-CATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTG 2304969
Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||| | || || || ||||||||||||
Sbjct 2304968 CCTGTGAGGGTCTTGACGAAGATCTGCATA 2304939
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
|||||| || || |||||||||||||| || || | || ||||| || ||||| || ||
Sbjct 2304618 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2304559
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| || ||||| || | || | ||||| ||||| ||| ||| ||| || |
Sbjct 2304558 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC-ACGT 2304500
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||| || || || || | |||||||| || || || || || ||||
Sbjct 2304499 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2304440
Query 33737 CAAAGATCTGCAT 33749
| || ||||||||
Sbjct 2304439 CGAAAATCTGCAT 2304427
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || || ||||||||||| || ||||| | || || | ||||| || || ||
Sbjct 2304336 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2304277
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | ||||||||| || | || | ||| || ||||| ||| ||| | | ||||
Sbjct 2304276 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC-GCCTTGACAT 2304218
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||| || ||||| |||| ||||| || || || || || || || |
Sbjct 2304217 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2304158
Query 33737 CAAAGATCTGCAT 33749
| |||||||||||
Sbjct 2304157 CGAAGATCTGCAT 2304145
>seq6
Length=2137015
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598
|||||| || || |||||||| || || || ||||| || || || ||||| |||| |
Sbjct 301547 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301488
Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658
| | || || || || ||||| | |||||||| || | || | ||||| |||||
Sbjct 301487 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301428
Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717
||| ||| || | ||| ||| | ||||| || || || || | |||||| ||
Sbjct 301427 GAATCTTCGCCTTGA-CATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 301369
Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||||| || | || || ||||||||||||||
Sbjct 301368 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703943914880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |