Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-37 seq7 86.0 9e-11 >seq3 Length=3048375 Score = 174 bits (192), Expect = 2e-37 Identities = 373/544 (69%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||| | || || || || ||||| ||||| ||| | |||| Sbjct 1875489 GATCTGGCAAATGTACAAAAAAG-CTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACC 1875431 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | || |||| ||||| ||| | | |||| | ||||| || || Sbjct 1875430 TGTCAAAAGATCTCCACG----ACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTT 1875375 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||||||| |||||| |||||| ||||||||||| ||||||||| | Sbjct 1875374 GTCTCGCATGTCCTCGCGTTTTTT-GCCGCCTCTGATGGCATCGTCAACGAGAACCTTGT 1875316 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| ||| ||||| || | | ||||| |||| || ||||||||||| || Sbjct 1875315 TGAGCGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAAT 1875256 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || ||||| |||||| || |||||||| || || ||||| || ||| ||||||| Sbjct 1875255 TATGATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGA 1875196 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 ||| | || |||| ||||| || | || || | || | || | | | Sbjct 1875195 CCCTAAGCAACGCGAGTACCT-TTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGA 1875137 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| |||||||| | |||||| | | | ||| ||| ||||| ||||| | Sbjct 1875136 AGGCGGACTGGGCACTACGCTGGATCTCCGA-TCGTCGCTCCACA-TTTGCTGAGCGATT 1875079 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 |||| ||| ||||| || |||||||| || ||||| || |||| | | ||||| || Sbjct 1875078 AGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTG 1875019 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | | |||||||| ||||||||||| || | || ||| ||| ||| | |||||||| | Sbjct 1875018 GTTGAAGAAGCGTGGCCTCATGCCTGGAC-TCACCTTCTCCAATGAACTCATCAGTCGTG 1874960 Query 1456306 ACGA 1456309 |||| Sbjct 1874959 ACGA 1874956 Score = 120 bits (132), Expect = 4e-21 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || || | ||| || |||||||| |||| |||||||||||||||||| || ||| | Sbjct 1874778 CTTCCTGTAGGGCTGATTGGCATGAATGCCAA-GCTCATGTGCCAGTACATCGAGTTT-G 1874721 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | || ||||| |||||| || ||||| ||| | ||||||||| || | ||||| Sbjct 1874720 TTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAA-AAGCACTACAACGCGACAAACCCC 1874662 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 ||| | ||||| ||||||| | |||| ||||||||||| || ||| || ||| Sbjct 1874661 TTCGACTTCATGGACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTG 1874602 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 | || ||| | |||||||||||||| || Sbjct 1874601 TCGGATTACTCAAAGGCCGGCGTCACGGC 1874573 >seq7 Length=1608521 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 165765 TGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCG 165824 ||||||||| |||| ||||||||||||||| ||| | |||||||| | || |||| Sbjct 925086 TGGGGCGCCATCGGCGCGCGCACCACCGAGTCTCAGCTCCACCGCGAACTCGCCTCGGGT 925145 Query 165825 CTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGAT 165884 | | | ||||| || |||||||| | |||||||||||||| | ||| |||| Sbjct 925146 GTCTCCTTCCCCATCGGGTTCAAAAATGGGACCGACGGCAGCGTCTCCGTCGCCGTCGAC 925205 Query 165885 GCCGTGCGCACTGCCGCCCAGCCACACACCTT 165916 ||| ||||| | || | | || ||| |||| Sbjct 925206 GCCATGCGCTCGTCCTCAAATCCGCACGCCTT 925237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809849674268