Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq1 123 2e-23
>seq6
Length=2137015
Score = 127 bits (140), Expect = 2e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 35529 CCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCA 35588
||||||| | || |||||| |||||||| || || | | ||| || |||| || |
Sbjct 300758 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300699
Query 35589 GCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGA 35648
||||||| ||||| || ||||| ||||||||||| | || | || |||||||||| ||
Sbjct 300698 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300639
Query 35649 TCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTAC 35708
|||| ||| | | | | |||||| || |||||||| | ||||||||| || |
Sbjct 300638 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300579
Query 35709 CCGTCAAAGTTTTCACAAATATCTGCAT 35736
| ||||| || ||||| || ||||||||
Sbjct 300578 CAGTCAACGTCTTCACGAAGATCTGCAT 300551
Score = 120 bits (132), Expect = 3e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || || ||||| || | || ||| || |||| || |||||||| |||
Sbjct 301533 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 301474
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || || | ||||||||||| | ||||| | ||||||||| ||||| |||
Sbjct 301473 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 301414
Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719
| | | | | |||||| || || ||||||| |||||| || |||||||| | ||
Sbjct 301413 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTC 301354
Query 35720 TTCACAAATATCTGCATTC 35738
|| ||||| ||||||||||
Sbjct 301353 TTGACAAAGATCTGCATTC 301335
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||| || || | | ||| || |||| || |||||||| ||||| ||
Sbjct 300455 CTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 300396
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | || | | |||||||||| ||||| ||||| |
Sbjct 300395 GATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGAATCTTCGCCTTCACGTT 300336
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | |||||||| || || || | || |||||
Sbjct 300335 ATCGATCGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCAC 300276
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 300275 GAAGATCTGCAT 300264
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| |||||||| || |||| | || || |||| || |||||||| ||||| ||
Sbjct 301024 CTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAA 300965
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||||| |||| || |||||| || ||||| ||||| |
Sbjct 300964 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTT 300905
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||| | ||| ||||| || ||||| | || || ||
Sbjct 300904 ATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGAC 300845
Query 35725 AAATATCTGCAT 35736
|| || |||||
Sbjct 300844 GAAAATTTGCAT 300833
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | | || || | || || || ||||| || || ||
Sbjct 301252 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 301193
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | | |||||||||| |||||| ||||| ||
Sbjct 301192 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGT 301134
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| ||| || ||||| | ||||||||| || || |||| || || |
Sbjct 301133 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 301074
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 301073 CGAAGATCTGCAT 301061
>seq1
Length=3403828
Score = 123 bits (136), Expect = 2e-23
Identities = 157/212 (74%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 35527 CACCAAA-TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGT 35585
|||||| || || ||| ||| || ||||| |||||||||| | |||||| | || |
Sbjct 2304637 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2304578
Query 35586 CCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCA 35645
||| |||||| || || || |||||||| |||||||| | ||||| | |||||||||
Sbjct 2304577 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2304518
Query 35646 TGATCTTTTGCTTCAGAGTTGCCACC-GTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704
||||| ||||| |||| || ||||| || || ||||| | ||||||||
Sbjct 2304517 GAATCTTCGCCTTCAC-GTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2304459
Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| ||||||||||| || || || ||||||||
Sbjct 2304458 TTCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2304427
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || | || || |||||||| ||||||||
Sbjct 2304903 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2304844
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| || |||| || | || |||||| ||| |||||| || | | |
Sbjct 2304843 AATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATT 2304784
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||| || ||||||| ||||| || || || |||| ||||||||
Sbjct 2304783 ATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 2304724
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 2304723 AAAGATCTGCAT 2304712
Score = 105 bits (116), Expect = 6e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 35529 CCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCA 35588
||| ||| | || ||||| || |||||||||||||| | | || || |||| ||||
Sbjct 2305147 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2305088
Query 35589 GCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGA 35648
||||| |||||||| |||| || |||||||||| || | || |||||||| |
Sbjct 2305087 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2305028
Query 35649 TCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTAC 35708
|||| ||||| | | | | |||||| || || ||||||| |||||| || || |
Sbjct 2305027 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2304968
Query 35709 CCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || | || || || || ||||||||
Sbjct 2304967 CTGTGAGGGTCTTGACGAAGATCTGCAT 2304940
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || |||||||||| | || ||| | || || ||||| ||||| || ||
Sbjct 2304336 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2304277
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | ||| | | |||||||||| ||||| ||| | | |
Sbjct 2304276 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2304217
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || ||||| || | ||||| || || |||||||| || || ||
Sbjct 2304216 GTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGAC 2304157
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 2304156 GAAGATCTGCAT 2304145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793521111120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |