Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 159 5e-34 >seq3 Length=3048375 Score = 159 bits (176), Expect = 5e-34 Identities = 359/537 (67%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | |||||| | |||||||||||| || | |||||||| ||||| || || Sbjct 1877242 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1877183 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || ||||| || || | |||||||||||| || |||||||| |||||||| || || || Sbjct 1877182 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1877123 Query 39758 GCAACAAGTCTCTCTCCGTAACTTGTATCATT----ATGTATCCACTTCTGTGCCCAATC 39813 || || | ||| | ||| | | | || | |||||| | | ||||| || Sbjct 1877122 GCCACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1877064 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 | |||| ||| || || || || || || || | ||| ||||| | | | Sbjct 1877063 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAAGCCACGCTGCTG 1877004 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 | || | || ||||| || | ||| || |||| || || |||||||| || Sbjct 1877003 AGAGTCAGGGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1876944 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | || |||||||| |||||||| | |||||| |||||| || |||| | Sbjct 1876943 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1876884 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 ||| ||| ||| || || || || || || |||||||||||| |||| |||| | Sbjct 1876883 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAACGCCAGGACATATGA 1876824 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCAGTCATTGATATCTTTTGATAT 40110 || |||| ||| | ||| ||| |||||||| ||||||||| || || Sbjct 1876823 TATGAAATGGCGTTCGTTATCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACAT 1876764 Query 40111 ATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 ||| | ||||| | ||||||||||| |||| || || |||||||| | ||| || Sbjct 1876763 ATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1876707 Score = 123 bits (136), Expect = 3e-23 Identities = 370/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || || Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || |||||||||||||| || |||||||| || | ||| || || | || ||||| || Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786 || ||||| ||||| || || || || || || || | || ||| | || || | | Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1875101 Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || ||||| ||||||| || || ||| | || |||||||| || || || Sbjct 1875102 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTC 1875161 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 | ||||| || || || | || | | || || | || ||||| || | || Sbjct 1875162 AACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1875221 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || | || ||||| ||||| ||| || || || ||||| || || | || Sbjct 1875222 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1875281 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||||| | || | || | | || || || || || ||||| Sbjct 1875282 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATC 1875341 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080 | ||||||||||| || | ||||| | ||| | |||| | || || Sbjct 1875342 AGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1875400 Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||||||||||| | || ||||||||| | || | ||||| || ||||| || |||| Sbjct 1875401 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1875460 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167 | || || ||||||||||| | ||| || Sbjct 1875461 CTTCAGCTTTTTTGTACATTTGCCAGAT 1875488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908679790960