Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 172 4e-38 >seq3 Length=3048375 Score = 172 bits (190), Expect = 4e-38 Identities = 393/576 (68%), Gaps = 29/576 (5%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| |||||||| ||||| ||||| || |||||||| | ||||| | ||| || Sbjct 1876707 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1876766 Query 43790 ACTAAAGA---CTTAGCACATTGGATTGCATTAA---AACCACAA-GAAAAACATTTTAT 43842 | ||||| ||| | | |||| | || | || | || ||| ||||| || Sbjct 1876767 TCCAAAGATATCTTCG---ACTGGAACG-ATAACCTGAATGATAACGAACGCCATTTCAT 1876822 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 ||| | || ||||||||||||| || |||||| || ||||| || ||| |||| Sbjct 1876823 ATCATATGTCCTGGCGTTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1876882 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| || ||||| ||| | |||| || ||||||||||| |||||||| Sbjct 1876883 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1876942 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA--- 44019 || ||||| ||||| ||||||| ||| ||| || || ||||| |||||| || Sbjct 1876943 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCCCTGACTC 1877002 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATA 44078 | ||| | | || || | || ||| |||| || || |||| |||| | || || | Sbjct 1877003 TCAGCA-GCGTGGCTTC--CTCTTCAATTCGATCGAGACTATACCATGCG-TCAAGCAGA 1877058 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAAT-TCAAATGAT--TCTTTTGGAGAACGA--CT 44133 | | || |||||||| | ||||| | | || | | | |||| |||| | Sbjct 1877059 AGACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTG--CCACGAGGTT 1877116 Query 44134 TGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTG 44193 || ||||| || | || ||||| || ||||| || ||||| ||||| | || || || Sbjct 1877117 GGTGGCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTG 1877176 Query 44194 GTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGA 44253 | | |||||||||||| | |||||||| || || ||||| || || | || ||||| || Sbjct 1877177 GCTGAAGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGA 1877236 Query 44254 TGAAGGCTTACATTGCGATTTTGCTTG---CTTGTT 44286 ||||| | || |||||||| || |||||| Sbjct 1877237 CGAAGGGATGCACACAGATTTTGCCTGTCTCTTGTT 1877272 Score = 107 bits (118), Expect = 2e-18 Identities = 372/570 (65%), Gaps = 24/570 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || |||||||||||||||||||| | ||||| || ||||| || ||||| | || || Sbjct 1875488 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1875429 Query 43790 ACTAAAGACTTAGCAC-ATTGGATT----GCATTAAAACCACAA-GAAAAACATTTTATA 43843 | ||||| | ||| | |||| | || |||| | |||| || || ||| | Sbjct 1875428 TCAAAAGATCTC-CACGACTGGAATAACCGCCTTAA--CGACAATGAGCGTCACTTTGTC 1875372 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || | ||||||||||| || || || || ||||| || || | ||| Sbjct 1875371 TCGCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAG 1875312 Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || || || | || ||||| | || || || || || || ||||| |||||| Sbjct 1875311 CGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1875252 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---T 44020 || |||||||| || || | ||| ||||| || ||||| |||||||| || | Sbjct 1875251 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1875192 Query 44021 GGGCA-CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 ||| || || | | | | || |||| | || || | ||| | ||| || Sbjct 1875191 AAGCAACGCGA-GTACC---TTTTCGATGCTGTTGAGACCATTCCTTGTGTCAAAAGGAA 1875136 Query 44080 AGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT-----TTTGGAGAACGACTT 44134 || |||||||| || ||||| | | | | || |||| || ||| | Sbjct 1875135 GGCGGACTGGGCACTACGCTGGATC--TCCGATCGTCGCTCCACATTTGCTGAGCGATTA 1875078 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 ||||| || || | |||||| ||||||||||| || || || || || | || || ||| Sbjct 1875077 GTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGG 1875018 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 || ||||| || || | |||||||| | || || || ||||| | || |||||||| Sbjct 1875017 TTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGAC 1874958 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || | ||| ||| || || |||||| Sbjct 1874957 GAGGGAATGCATACCGACTTCGCATGCTTG 1874928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455932184070