Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 120 4e-22 seq1 82.4 9e-11 >seq3 Length=3048375 Score = 120 bits (132), Expect = 4e-22 Identities = 336/506 (66%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||||||||| |||||||||||| |||||| || || |||||||| || |||||| Sbjct 1874953 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1875012 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || | || || || |||||||| || ||||||||| ||||| Sbjct 1875013 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1875072 Query 130154 GCAAAGAGACGCTCAGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 130209 || | | ||||||||||| ||||| ||| | | | | ||| | ||||| Sbjct 1875073 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1875128 Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 130268 | |||||| | | || ||| || | ||||| | || || || || | || | || Sbjct 1875129 GTCCGCCTTCCTTTTGACACAAGGAATGGTCTCAACAGCATCGAAAAGGTACTCGCGTTG 1875188 Query 130269 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT 130328 || | || || |||||||| |||| || || || || || |||| |||| ||| Sbjct 1875189 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1875247 Query 130329 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA 130387 ||| || || || ||||||| | ||||| || ||| ||||| | | Sbjct 1875248 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1875306 Query 130388 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447 || | | | ||||| || || ||||| || | ||||||||||| |||| | Sbjct 1875307 AAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAGGCGGCAAAAAACGCGAGGACA 1875366 Query 130448 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTC 130504 | | | || | | ||||| ||||| | || | |||||||||| ||||| || Sbjct 1875367 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1875426 Query 130505 GAGAGATCTACCTCCTCCGCAGTCCA 130530 || || || | ||| || |||||||| Sbjct 1875427 GACAGGTCCATCTCTTCGGCAGTCCA 1875452 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | || ||||| || || ||||| || || ||| | ||| Sbjct 1877261 GGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACC 1877202 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| || ||||||| |||||| || | | ||| || || ||||||||||| Sbjct 1877201 AGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGAT 1877142 Query 130135 CCCCTCCACACACGCGAACGC 130155 ||| || || ||||||||| Sbjct 1877141 CCCTTCTACCGCCGCGAACGC 1877121 >seq1 Length=3403828 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/324 (66%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 14151 CAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||| ||||||||||| | |||| || || |||| || ||||| || || ||| || Sbjct 2121771 CAAAACCATCCATCTC-GACAAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTCCCA 2121829 Query 14210 GGCATA---CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 ||| || ||| | |||| |||||||| |||||||||||| |||||||| | | Sbjct 2121830 CCCATGTTGCCTCCCTTTCCGCGTGACTTACCGATGGCGTCAATTTCGTCGATGAAGATG 2121889 Query 14267 ATACATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACC 14322 || || || || | ||| ||| | | || | || || || | | || ||| Sbjct 2121890 ATGCAAGGGGCATTTTTCTTCGCGGAC----GCGAAAAGGTCGCGTACACGCGAGGAACC 2121945 Query 14323 GACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGA 14382 ||||| || |||||||| || || | || |||| || ||| |||||| | | Sbjct 2121946 AACACCGACGAACATCTCGACGAATTCGGAACCGGAGACGGAGAGGAAAGGGACGCTCGC 2122005 Query 14383 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442 ||| || ||| |||| || || | ||||| || || || || || | ||| | Sbjct 2122006 TTCGCCGGCGGTGGCCTTAGCAAGTAACGTCTTTCCTGTACCAGGAGGTCCGGAGAGGAT 2122065 Query 14443 GGCACCACGTGGGATCCTGGCACC 14466 |||||| || |||||| | || || Sbjct 2122066 GGCACCGCGAGGGATCTTAGCCCC 2122089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435091773840