Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 105 7e-18 seq3 96.9 4e-15 >seq5 Length=2295515 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| ||| | ||||| | ||| Sbjct 539415 AAAAGATCGGGGATCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 539356 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 || || ||| || |||| || || ||| ||||||||||| ||||| |||||||| Sbjct 539355 TGATTTTTACGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATT 539296 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | |||| ||||||| ||||| || | ||| || || || || || | | Sbjct 539295 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGATCGACATAGCGAGCAGTCGCGTCGTAT 539236 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGG 79594 | ||||||||||| || || |||| || Sbjct 539235 GCGCGGAGCATGGGAACAATACCGTTGG 539208 Score = 104 bits (114), Expect = 3e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| |||| ||||||||||| |||||||| || |||||| ||||| | ||||| Sbjct 540790 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 540733 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | || | |||| | | || |||| || || | || ||| || || || |||||| Sbjct 540732 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 540673 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 |||| |||| || ||||| || || | ||| | ||| ||| |||| |||||||||| Sbjct 540672 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGA 540613 Query 78365 TGGTCCGGTAAATGGCCTT 78383 |||| || || ||||| Sbjct 540612 CGGTCTTATAGATCGCCTT 540594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| || || | |||||| ||||| ||| | |||||||| | | ||| | | Sbjct 540589 ACGTCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCG 540648 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || || | |||| |||||| || || || || ||| | || || || Sbjct 540649 CTGCGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 540708 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 ||| || | |||| | | |||||| | ||||||||| | ||||||||||| | Sbjct 540709 CGACGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 540768 Query 20796 GCATGTACTATCTGCGGACCCG 20817 |||||||||| ||||| || || Sbjct 540769 GCATGTACTACCTGCGCACGCG 540790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| |||| ||||||||||| ||||| || || |||||| ||||| | ||||| Sbjct 538838 CGCGTG--CGCAGGTAGTACATGCCGGTCTTCAGCCCGCGCTTCCAACCGTAGAAGTGCA 538781 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | || | |||| | | || ||||| | || | || ||||| || || |||||| Sbjct 538780 TGCTGGTGAGCTGGCCGAGCGTCGGGGATTGCAGGTGGACATTGAGAGATTGCGACTGGC 538721 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 ||| |||| || ||||| || || | ||| | |||| ||| |||| ||||||| || Sbjct 538720 AAATGAACGCTCCACGGTCCGCAGCGAGGTCCAGGACCCTCTTCTGCGAGATCTCCCGGA 538661 Query 78365 TGGTCCGGTAAATGGCCTT 78383 ||| || || ||||| Sbjct 538660 CAGTCTTATAGATAGCCTT 538642 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| |||| ||||||||||| |||||||| || |||||| ||||| | ||||| Sbjct 541073 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 541016 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | || | |||| | | || |||| || || | || ||| || || || |||||| Sbjct 541015 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 540956 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCC 78360 |||| |||| || ||||| || || | ||| | ||| ||| |||| |||||| Sbjct 540955 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCC 540900 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 79712 CCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC---TGTGGGTTGT 79768 |||| || ||||| || ||||| |||||||| || ||| || || || ||| Sbjct 536787 CCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACA---CGAGCTCAATTGAGGATTGG 536731 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCAGA 79827 ||||| ||||||||||| || || | ||||| |||||| ||| || || |||||| Sbjct 536730 GTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGG-ACATCAGG 536672 Query 79828 TCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 79887 | ||| || || | |||| || || ||||||| |||||||| || ||||||||| Sbjct 536671 TTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGCATG 536612 Query 79888 AAGAGGTACTGGGG 79901 | | || ||| || Sbjct 536611 ATCATGTGCTGTGG 536598 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| || | ||||| | ||| Sbjct 537501 AAAAGATCGGGGATCCAAAGTGCATAGAAGAGGTCGCGTGCACAAACTTCCTCCTTGCCG 537442 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCC-ATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505 ||||| ||| || |||| || || ||| | ||||| ||||| ||||| | |||||| Sbjct 537441 TGGTTTTTACGGAGGTCGACGAACTCATATG-TATCGGCATGCCATGGCTCAATATAGAT 537383 Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565 ||||| | ||| | | ||| ||||| || | ||| || || || || | || | | Sbjct 537382 TGCGAAAGCGCCCAGGAGTTTGTTACCGCCTTGATCGACATAGCGAGCAGTCTCGTCGTA 537323 Query 79566 AACTCGGAGCATGGGCACGATGCC 79589 | ||||||||||| || || || Sbjct 537322 CGCGCGGAGCATGGGAACAATACC 537299 >seq3 Length=3048375 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332 |||||||| ||||||| || ||||| || ||| |||| ||| ||| | || | Sbjct 1874736 CAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1874679 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 || || || ||||| ||||||| ||||| | ||||| ||| | |||||||||||| Sbjct 1874678 -ACAACGCGACAAACCCCTTCGACTTCATGGACATGATCTCTTTGCAGGGGAAGACCAAC 1874620 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||||||||||||||| |||||| |||||| Sbjct 1874619 TTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1874587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160