Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
seq10 89.7 6e-13
seq9 82.4 8e-11
>seq5
Length=2295515
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| ||| || ||| || |||||||| | |||||||| | ||||| | ||
Sbjct 540592 TCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCGCTG 540651
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| || ||||| |||| |||| |||||| || ||||| ||| || | || || |||
Sbjct 540652 CGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTCCGA 540711
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| || | | || | | | |||||||||||||| |||||| || |||||||| || |
Sbjct 540712 CGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCGGCA 540771
Query 55908 TGTACTATCTGCGGACCCG 55926
||||||| ||||| || ||
Sbjct 540772 TGTACTACCTGCGCACGCG 540790
Score = 93.3 bits (102), Expect = 5e-14
Identities = 125/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 55753 GGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA 55812
|||||| | |||||||| | ||||| | ||| || ||||| |||| |||| |||
Sbjct 540900 GGAGATCTCGCAGAAGAGGGTTCTTGACCTCGCTGCGGACCGTGGAGCGTTCATCTGCCA 540959
Query 55813 GTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCA 55872
||| || ||||| ||| || | || || ||| | || | | || | | | |||||
Sbjct 540960 GTCACAATCTCTAAACGTCCACTTGCAGTCTCCGACGCTCGGCCAGCTCACCAGCATGCA 541019
Query 55873 CTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926
||||||||| |||||| || |||||||| || |||||||| ||||| || ||
Sbjct 541020 CTTTTACGGCTGGAAGCGTGGGCTCAAGACCGGCATGTACTACCTGCGCACGCG 541073
>seq10
Length=1436600
Score = 89.7 bits (98), Expect = 6e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730
|| ||||||||||||||||| | || || ||| |||||||||||| || ||
Sbjct 485037 GTGATCTTGCGCGTCACAAAGGTGCGGCCACGACGCGGGCTCTCGTGGTTGAAAAGGATA 484978
Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790
|| | |||||| |||| ||||||| ||| | |||||| || ||||| || | |
Sbjct 484977 CCGTTGCACGCATACATGCCGTACGCCTCCCTGTAGTTCTTGCAGATCCAGAACGCGTAC 484918
Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837
||||| | |||||||| ||| || |||||||| || ||||| ||
Sbjct 484917 AGCTTTGCAACGCCATACGGGGAGCGCGGGTAGAACGGCGTGTTCTC 484871
>seq9
Length=1647769
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231
|| || || |||||| || ||||| || ||||| || || ||||| || || || ||
Sbjct 1406212 GCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTATCGCGCCCG 1406271
Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291
|| || | ||| || |||| |||||||||||| || || || || || || | |||||||
Sbjct 1406272 ACGACACCCAACCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGAGAATAAGA 1406331
Query 118292 GTGCA 118296
|| ||
Sbjct 1406332 GTACA 1406336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215904237200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |