Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq10 89.7 6e-13 seq9 82.4 8e-11 >seq5 Length=2295515 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| || ||| || |||||||| | |||||||| | ||||| | || Sbjct 540592 TCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCGCTG 540651 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || ||||| |||| |||| |||||| || ||||| ||| || | || || ||| Sbjct 540652 CGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTCCGA 540711 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | || | | || | | | |||||||||||||| |||||| || |||||||| || | Sbjct 540712 CGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCGGCA 540771 Query 55908 TGTACTATCTGCGGACCCG 55926 ||||||| ||||| || || Sbjct 540772 TGTACTACCTGCGCACGCG 540790 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 55753 GGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA 55812 |||||| | |||||||| | ||||| | ||| || ||||| |||| |||| ||| Sbjct 540900 GGAGATCTCGCAGAAGAGGGTTCTTGACCTCGCTGCGGACCGTGGAGCGTTCATCTGCCA 540959 Query 55813 GTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCA 55872 ||| || ||||| ||| || | || || ||| | || | | || | | | ||||| Sbjct 540960 GTCACAATCTCTAAACGTCCACTTGCAGTCTCCGACGCTCGGCCAGCTCACCAGCATGCA 541019 Query 55873 CTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||||||||| |||||| || |||||||| || |||||||| ||||| || || Sbjct 541020 CTTTTACGGCTGGAAGCGTGGGCTCAAGACCGGCATGTACTACCTGCGCACGCG 541073 >seq10 Length=1436600 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 || ||||||||||||||||| | || || ||| |||||||||||| || || Sbjct 485037 GTGATCTTGCGCGTCACAAAGGTGCGGCCACGACGCGGGCTCTCGTGGTTGAAAAGGATA 484978 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAG 124790 || | |||||| |||| ||||||| ||| | |||||| || ||||| || | | Sbjct 484977 CCGTTGCACGCATACATGCCGTACGCCTCCCTGTAGTTCTTGCAGATCCAGAACGCGTAC 484918 Query 124791 AGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||||| | |||||||| ||| || |||||||| || ||||| || Sbjct 484917 AGCTTTGCAACGCCATACGGGGAGCGCGGGTAGAACGGCGTGTTCTC 484871 >seq9 Length=1647769 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118172 GCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCC 118231 || || || |||||| || ||||| || ||||| || || ||||| || || || || Sbjct 1406212 GCTTCGCGCACGTTGAGCATTTTACCGCGAAGTGGGAAGACTCCAAAGTTATCGCGCCCG 1406271 Query 118232 ACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGA 118291 || || | ||| || |||| |||||||||||| || || || || || || | ||||||| Sbjct 1406272 ACGACACCCAACCCCGCAACAGCAAGGGCCTTGGCAGAATCTCCTTCAGTGAGAATAAGA 1406331 Query 118292 GTGCA 118296 || || Sbjct 1406332 GTACA 1406336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215904237200