Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 2e-16
seq6 98.7 7e-16
>seq1
Length=3403828
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || | ||||| || |||||||||||||| || || || ||
Sbjct 2304427 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2304486
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||| | | || || ||| ||||| ||||| | || || || ||
Sbjct 2304487 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2304546
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || || || || || || |||| || | || ||| | |||||||||
Sbjct 2304547 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2304606
Query 23791 ATACAAAAAGAGTCCACATTACA 23813
|| || |||||||| || || ||
Sbjct 2304607 ATTCAGAAAGAGTCTACTTTGCA 2304629
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || || ||||| | || || || || ||
Sbjct 2304940 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2304999
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | || ||||| ||||| | ||||| || ||
Sbjct 2305000 GACACGATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGCATCCCGCCGGACCA 2305058
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787
|| || | || ||||| ||||| ||| |||| |||| ||||| ||| || |||||
Sbjct 2305059 GCAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGG--ATTAC 2305116
Query 23788 AACATACAAAAAGAG 23802
||||| || ||||||
Sbjct 2305117 AACATTCAGAAAGAG 2305131
>seq6
Length=2137015
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||||||||||| || ||||| || ||||| || || || |
Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| || || || || | || || || ||
Sbjct 300893 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300952
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| || || || || ||||| || || ||||||| |||||| | ||| || |||
Sbjct 300953 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301012
Query 23791 ATACAAAAAGAGTCCACATTACAT 23814
|| || || |||||||| || |||
Sbjct 301013 ATTCAGAAGGAGTCCACCTTGCAT 301036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009542327112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |