Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq6 98.7 7e-16 >seq1 Length=3403828 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||| || |||||||||||||| || || || || Sbjct 2304427 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2304486 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || ||| ||||| ||||| | || || || || Sbjct 2304487 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2304546 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || || || |||| || | || ||| | ||||||||| Sbjct 2304547 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2304606 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || |||||||| || || || Sbjct 2304607 ATTCAGAAAGAGTCTACTTTGCA 2304629 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| | || || || || || Sbjct 2304940 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2304999 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| ||||| | ||||| || || Sbjct 2305000 GACACGATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGCATCCCGCCGGACCA 2305058 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787 || || | || ||||| ||||| ||| |||| |||| ||||| ||| || ||||| Sbjct 2305059 GCAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGG--ATTAC 2305116 Query 23788 AACATACAAAAAGAG 23802 ||||| || |||||| Sbjct 2305117 AACATTCAGAAAGAG 2305131 >seq6 Length=2137015 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||||||||| || ||||| || ||||| || || || | Sbjct 300833 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300892 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || || || | || || || || Sbjct 300893 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300952 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || ||||||| |||||| | ||| || ||| Sbjct 300953 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301012 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || |||||||| || ||| Sbjct 301013 ATTCAGAAGGAGTCCACCTTGCAT 301036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009542327112