Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 4e-33
>seq3
Length=3048375
Score = 156 bits (172), Expect = 4e-33
Identities = 377/569 (66%), Gaps = 9/569 (2%)
Strand=Plus/Minus
Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598
||||| | ||| |||||||| |||| |||||||| | ||||||||||||||||||
Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| ||||| || ||||| | ||||| || || ||||| || || | ||||| || ||
Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|| ||||| || |||||||| || || ||||| || || | | | |||| |
Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1877093
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778
| ||| ||||| | | ||||| | | || | ||| ||||| || || || |
Sbjct 1877092 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1877033
Query 4779 ATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835
|| | || || || || | | | | ||| | || || || || || ||
Sbjct 1877032 ATCGAATTGAAGAGGAAGCCACGCTGCTGA---GAGTCAGGGATGTAGGTATCGATGAGG 1876976
Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895
|| || |||| || || || ||||| || || |||||||| ||||| || |
Sbjct 1876975 AGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGG 1876916
Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955
|||| | |||| |||||| | |||| | || || | || ||||| || ||||||
Sbjct 1876915 ACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCG 1876856
Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015
|| || ||||||||||||| |||| ||||| || | |||||| | || ||
Sbjct 1876855 TCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGG 1876796
Query 5016 TT---TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072
|| ||||||| | | |||||| | | ||| | ||||| |||||||||||
Sbjct 1876795 TTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1876736
Query 5073 GCTTCCGCTTTTTTGTACATAGACCAAAT 5101
|| | ||||| |||||||| ||||||
Sbjct 1876735 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1876707
Score = 131 bits (144), Expect = 1e-25
Identities = 367/559 (66%), Gaps = 7/559 (1%)
Strand=Plus/Plus
Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598
|||| || || || || || ||||| || ||||| | || || ||||| || ||
Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| || | ||| ||||| | || | ||| || | ||| || || | ||| || || ||
Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|| ||||| ||||| || || ||||| || || |||||||| | || | | |
Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1875102
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778
|| ||||| || |||||||| || || | || || || ||||| || |
Sbjct 1875103 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTCTCA 1875162
Query 4779 ATAGCGTTAAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836
| ||| | || || |||| || | | || ||||| | ||||| || || || |
Sbjct 1875163 ACAGCATCGAA-AAGGTACTCGCGTTGCTTAGGGTCCTTGA-TGTAAGTATCGATAAGAA 1875220
Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896
|| || | || || |||||||| || ||| || || ||||| ||||| | |
Sbjct 1875221 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1875280
Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956
| || | | ||||| ||||| | || | || || | ||| ||||| || || || |
Sbjct 1875281 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1875340
Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA--- 5013
|| ||| ||||||||||| | ||||| || | ||||| | || | ||||
Sbjct 1875341 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1875400
Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073
| || ||||||| | | | |||||| | | || | ||||| ||||||| || ||||
Sbjct 1875401 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1875460
Query 5074 CTTCCGCTTTTTTGTACAT 5092
|||| ||||||||||||||
Sbjct 1875461 CTTCAGCTTTTTTGTACAT 1875479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049527134662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |