Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11- 03] 14 sequences; 27,696,343 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 >seq3 Length=3048375 Score = 178 bits (196), Expect = 2e-39 Identities = 386/572 (67%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| || ||||| || |||| || |||||||| Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC-TCTC---CGT-AACTGG 48306 || ||||| || |||||||| ||||| || || | ||| | | ||| || | Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCG- 1877094 Query 48307 CTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 || || ||||||| | ||||| || | ||||| ||| || || || || || | Sbjct 1877093 -TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1877035 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAGTATCTATT 48422 | || | ||| ||||| ||| | |||| || | ||| ||||| || Sbjct 1877034 CGATCGAATTGAAGAGGAAG----CCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATG 1876979 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 | ||| || |||| |||||||| ||||| || || |||||||| |||||||| Sbjct 1876978 AGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAG 1876919 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 | |||| | | ||||| || | |||| || || ||| |||||| || || || Sbjct 1876918 CGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATA 1876859 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602 || || ||| |||||||| || | |||| | || |||| |||||| | || Sbjct 1876858 CCGTCGGAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTC 1876799 Query 48603 AGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 || ||| |||||||| ||||||||| || ||||| | ||||| | |||||||| Sbjct 1876798 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1876739 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || |||| ||||| || ||||| | ||| || Sbjct 1876738 GAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1876707 Score = 161 bits (178), Expect = 1e-34 Identities = 385/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1874923 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1874982 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || ||||| || ||||| || ||||| || || | ||| || |||| |||||||| || Sbjct 1874983 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1875042 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306 || ||||| ||||| || || || || || ||| ||| || ||| | || || | Sbjct 1875043 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1875099 Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | ||||| ||| ||||||| || |||||| | || |||||||| || || Sbjct 1875100 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAAGGAATGGTC 1875159 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421 || | ||||| || ||| | | | ||||| || || | ||||||||| || Sbjct 1875160 TCAACAGCATCGAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1875215 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||| || | ||| ||| |||||||| || || || || ||||| || || Sbjct 1875216 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1875275 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||| || | ||| ||||| | | || || ||| | | ||||| || || || Sbjct 1875276 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1875335 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595 |||||| || |||||||| || | ||||| | ||| | || ||||| Sbjct 1875336 GCCATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1875395 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | ||| ||||||||| | || ||||||||| | || | ||||| || ||||| Sbjct 1875396 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCA 1875452 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || || || |||||||| ||||| | ||| || Sbjct 1875453 GAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGAT 1875488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960