Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3 165 1e-35
>seq3
Length=3048375
Score = 165 bits (182), Expect = 1e-35
Identities = 378/566 (67%), Gaps = 6/566 (1%)
Strand=Plus/Minus
Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
|||| | ||| |||||||| || | ||||| || | |||||| | ||||||||||
Sbjct 1877272 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1877213
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
|| || | |||||||| || || || || || ||||| || || | || ||||||||
Sbjct 1877212 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1877153
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CAT 46798
|| ||||| || |||||||| |||||||| || || | ||| | | | | | |
Sbjct 1877152 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1877093
Query 46799 CATTATGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857
| || |||||||| | ||||| || | ||| | ||| || || || || || ||
Sbjct 1877092 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1877033
Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917
|| | ||| ||||| ||| | | | || | || ||||| || | |||
Sbjct 1877032 ATCGAATTGAAGAGGAAGCCACGCTGCTGAGAGTCAGGGATGTAGGTATCGATGAGGAGA 1876973
Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977
|| |||| || ||||||||||| || || |||||||| |||||||| | ||
Sbjct 1876972 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1876913
Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037
|||| ||||| || | |||| || || || |||||| || || || || ||
Sbjct 1876912 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1876853
Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097
||| |||||||| |||| |||| | || |||| ||| | | |||| |||
Sbjct 1876852 GAAGCGGCAAAAAACGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAGGTTA 1876793
Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154
|||||||| ||||||||| || ||||| | ||||| | ||||| || || |||
Sbjct 1876792 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1876733
Query 47155 TCTGCTTTTTTATACATATTCCATAT 47180
| ||||| || ||||| | ||| ||
Sbjct 1876732 TGGGCTTTCTTGTACATCTGCCAAAT 1876707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934275236480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |