Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457895.1_202015-11-
03] 14 sequences; 27,696,343 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 8e-34
seq1 145 2e-29
seq8 84.2 5e-11
>seq6
Length=2137015
Score = 159 bits (176), Expect = 8e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || |||||||||||||||||||| || |||
Sbjct 300267 CAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCGGAC 300326
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| || |||||||| || ||||||||
Sbjct 300327 ACGATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGAATCCCCCCCGACCAGCAG 300386
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || |||||||| || || | || ||| | || |||||| ||
Sbjct 300387 CGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAACATC 300446
Query 178104 CAAAAAGAATCAACACTGCATCT 178126
|| || || || || || |||||
Sbjct 300447 CAGAAGGAGTCGACCCTTCATCT 300469
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || ||||| || || ||||| || |||||||| || || |||
Sbjct 300836 CAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCTGAC 300895
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||| || || || || || || |||||||||||
Sbjct 300896 ACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAGCAG 300955
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || ||||||||||| || | |||||| |||| |||||| |
Sbjct 300956 CGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAACATT 301015
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||||| ||
Sbjct 301016 CAGAAGGAGTCCACCTTGCATCTCGT 301041
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || |||||||| |||||||| || || |||
Sbjct 301064 CAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCTGAC 301123
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||||||||||||| || || ||||| || ||||||||
Sbjct 301124 ACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 301183
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || || ||||| |||||| | |||||| | || || || ||
Sbjct 301184 CGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAATATC 301243
Query 178104 CAAAAAGAATCAACACTGCATCT 178126
|| || || || || || |||||
Sbjct 301244 CAGAAGGAGTCGACTCTTCATCT 301266
Score = 138 bits (152), Expect = 3e-27
Identities = 151/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || ||||| |||||||| ||||||||||| || |||
Sbjct 300554 CAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCTGAC 300613
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 300614 ACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 300673
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| || || |||||||| || || | || ||| | || |||||| |
Sbjct 300674 CGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAACATT 300733
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || || || || || |||
Sbjct 300734 CAGAAGGAGTCGACCCTCCAT 300754
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || ||||| || ||||| || || |||
Sbjct 301340 CAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTCGGAC 301399
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct 301400 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAG 301459
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || |||||||| || || | || || | || || || ||
Sbjct 301460 CGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAATATC 301519
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 301520 CAGAAGGA 301527
>seq1
Length=3403828
Score = 145 bits (160), Expect = 2e-29
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || || || |||||||| |||||||| || || |||
Sbjct 2304430 CAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCGGAC 2304489
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || |||||||||||||| ||||| || ||||| |||||||||
Sbjct 2304490 ACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAA 2304549
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| ||||| ||| | || ||||| | ||||| ||||||| || |
Sbjct 2304550 CGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAATATT 2304609
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| ||||| || || |||| ||||
Sbjct 2304610 CAGAAAGAGTCTACTTTGCACCTTG 2304634
Score = 140 bits (154), Expect = 8e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| || || ||||| || |||
Sbjct 2304148 CAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCGGAC 2304207
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 2304208 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 2304267
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || |||||||| || ||||| | || ||| ||||||| || ||
Sbjct 2304268 CGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAATATC 2304327
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 2304328 CAGAAGGAGTCTACCCTTCACCTTG 2304352
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || |||||||| || || ||||| | ||||| || || |||
Sbjct 2304943 CAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCGGAC 2305002
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 2305003 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAA 2305062
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || || | || || || | || ||| | ||||| ||| |
Sbjct 2305063 CGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAACATT 2305122
Query 178104 CAAAAAGA 178111
|| |||||
Sbjct 2305123 CAGAAAGA 2305130
Score = 98.7 bits (108), Expect = 2e-15
Identities = 88/110 (80%), Gaps = 3/110 (3%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | |||||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 696271 AAAATGC---AGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAG 696215
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024
|| ||||||||||| ||||||||| ||||| |||||||| |||||
Sbjct 696214 TCTTCTGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGG 696165
>seq8
Length=1864753
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085
||||| || |||||||| || || || || |||||||| ||||||||||| || | ||
Sbjct 444757 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 444698
Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| |||||||||| ||||||| || || || || || |||||
Sbjct 444697 CTCAGCGATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGT 444654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730984080716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |